nadK:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nadK

Mnemonic

Nicotinamide adenine dinucleotide

Synonyms

yfjB, ECK2611, b2615, JW2596, ppnK, yfjE[1][2], yfjE

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

59.25 minutes 

MG1655: 2748853..2749731
<gbrowseImage> name=NC_000913:2748853..2749731 source=MG1655 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2634665..2635543
<gbrowseImage> name=NC_012759:2634665..2635543 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2749487..2750365
<gbrowseImage> name=NC_007779:2749487..2750365 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2748853

Edman degradation

PMID:11488932[3]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12192

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12192

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002081

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947092

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2109

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008603

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. Kawai, S et al. (2001) Molecular characterization of Escherichia coli NAD kinase. Eur. J. Biochem. 268 4359-65 PubMed
  4. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

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