murI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MurI

Synonyms

glutamate racemase[1], B3967[2][1], YijA[2][1], Glr[2][1], Dga[2][1], MurI[2][1] , dga, ECK3959, glr, JW5550, yijA, b3967

Product description

MurI[2][3];

Component of glutamate racemase[2][3]

Glutamate racemase; D-glutamate synthesis;[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0007047

cellular cell wall organization

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001920

P

Seeded from EcoCyc (v14.0)

complete

GO:0008360

regulation of cell shape

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0133

P

Seeded from EcoCyc (v14.0)

complete

GO:0008881

glutamate racemase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00258

F

Seeded from EcoCyc (v14.0)

complete

GO:0008881

glutamate racemase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004391

F

Seeded from EcoCyc (v14.0)

complete

GO:0008881

glutamate racemase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.1.1.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00258

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004391

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0573

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0016855

racemase and epimerase activity, acting on amino acids and derivatives

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001920

F

Seeded from EcoCyc (v14.0)

complete

GO:0016855

racemase and epimerase activity, acting on amino acids and derivatives

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018187

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of glutamate racemase

could be indirect

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-888865

Protein

nusG

PMID:15690043[5]

Experiment(s):EBI-893999

Protein

rplK

PMID:15690043[5]

Experiment(s):EBI-893999

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-893999

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-893999
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRQSMATKLQ DGNTPCLAAT PSEPRPTVLV FDSGVGGLSV YDEIRHLLPD LHYIYAFDNV
AFPYGEKSEA FIVERVVAIV TAVQERYPLA LAVVACNTAS TVSLPALREK FDFPVVGVVP
AIKPAARLTA NGIVGLLATR GTVKRSYTHE LIARFANECQ IEMLGSAEMV ELAEAKLHGE
DVSLDALKRI LRPWLRMKEP PDTVVLGCTH FPLLQEELLQ VLPEGTRLVD SGAAIARRTA
WLLEHEAPDA KSADANIAFC MAMTPGAEQL LPVLQRYGFE TLEKLAVLG
Length

289

Mol. Wt

31.504 kDa

pI

5.3 (calculated)

Extinction coefficient

21,430 - 22,055 (calc based on 7 Y, 2 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

24..236

PF01177 Asp/Glu/Hydantoin racemase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=murI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111671

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948467

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012989

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P22634

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11204

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11204

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948467

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001184

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1189

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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