kptA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

KptA

Synonyms

2'-phosphotransferase[1], B4331[2][1], YjiI[2][1], KptA[2][1] , ECK4322, JW5784, yjiI, b4331

Product description

enzyme with tRNA 2'-phosphotransferase activity[2][3]

2'-phosphotransferase, ligated tRNA substrate in vitro, physiological role and in vivo substrate unknown[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006388

tRNA splicing, via endonucleolytic cleavage and ligation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00299

P

Seeded from EcoCyc (v14.0)

complete

GO:0006388

tRNA splicing, via endonucleolytic cleavage and ligation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002745

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00299

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002745

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MWKRLCAGLS CRKFINQVTM TSVNKNRKSR DENEMAKYNE KELADTSKFL SFVLRHKPEA
IGIVLDREGW ADIDKLILCA QKAGKRLTRA LLDTVVATSD KKRFSYSSDG RCIRAVQGHS
TSQVAISFAE KTPPQFLYHG TASRFLDEIK KQGLIAGERH YVHLSADEAT ARKVGARHGS
PVILTVKAQE MAKRGLPFWQ AENGVWLTST VAVEFLEW
Length

218

Mol. Wt

24.556 kDa

pI

10.0 (calculated)

Extinction coefficient

33,460 - 33,960 (calc based on 4 Y, 5 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

5..180

PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=kptA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111732

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948858

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014204

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39380

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7928

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12570

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948858

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004423

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2458

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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