kdsA:Gene Product(s)
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| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
KdsA |
|---|---|
| Synonyms |
3-deoxy-D-manno-octulosonate 8-phosphate synthase[1], B1215[2][1], KdsA[2][1] , ECK1203, JW1206, b1215 |
| Product description |
KdsA[2]; 3-deoxy-D-manno-octulosonate 8-phosphate synthase[3]; Component of [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase|3-deoxy-D-manno-octulosonic acid 8-phosphate synthase]][2]; [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase|3-deoxy-D-manno-octulosonate 8-phosphate synthase]][3] 3-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis[4] |
| EC number (for enzymes) | |
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005829 |
cytosol |
IDA: Inferred from Direct Assay |
C |
Seeded from EcoCyc (v14.0) |
complete | |||
| GO:0008676 |
3-deoxy-8-phosphooctulonate synthase activity |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008676 |
3-deoxy-8-phosphooctulonate synthase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008676 |
3-deoxy-8-phosphooctulonate synthase activity |
GOA:spec |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0019294 |
keto-3-deoxy-D-manno-octulosonic acid biosynthetic process |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase|3-deoxy-D-manno-octulosonic acid 8-phosphate synthase]] |
could be indirect |
||
|
Protein |
djlA |
Experiment(s):EBI-1139204 | ||
|
Protein |
mdoD |
Experiment(s):EBI-1139204 | ||
|
Protein |
groL |
Experiment(s):EBI-1139204 | ||
|
Protein |
sdhA |
Experiment(s):EBI-1139204 | ||
|
Protein |
groL |
Experiment(s):EBI-881294 | ||
|
Protein |
rcsC |
Experiment(s):EBI-881294 | ||
|
Protein |
hldD |
Experiment(s):EBI-881294 | ||
|
Protein |
rplA |
Experiment(s):EBI-881294 | ||
|
Protein |
rplS |
Experiment(s):EBI-881294, EBI-888757 | ||
|
Protein |
rplV |
Experiment(s):EBI-881294, EBI-888757 | ||
|
Protein |
rplX |
Experiment(s):EBI-881294, EBI-888757 | ||
|
Protein |
rpsC |
Experiment(s):EBI-881294, EBI-888757 | ||
|
Protein |
rpsM |
Experiment(s):EBI-881294 | ||
|
Protein |
tufA |
Experiment(s):EBI-881294, EBI-888757 | ||
|
Protein |
ybdN |
Experiment(s):EBI-881294 | ||
|
Protein |
gyrA |
Experiment(s):EBI-881294 | ||
|
Protein |
kdsB |
Experiment(s):EBI-881294 | ||
|
Protein |
metK |
Experiment(s):EBI-881294 | ||
|
Protein |
ypeA |
Experiment(s):EBI-888757 | ||
|
Protein |
hupA |
Experiment(s):EBI-888757 | ||
|
Protein |
murE |
Experiment(s):EBI-888757 | ||
|
Protein |
rplC |
Experiment(s):EBI-888757 | ||
|
Protein |
rplD |
Experiment(s):EBI-888757 | ||
|
Protein |
rplE |
Experiment(s):EBI-888757 | ||
|
Protein |
rplF |
Experiment(s):EBI-888757 | ||
|
Protein |
rplI |
Experiment(s):EBI-888757 | ||
|
Protein |
rplL |
Experiment(s):EBI-888757 | ||
|
Protein |
rplM |
Experiment(s):EBI-888757 | ||
|
Protein |
rplN |
Experiment(s):EBI-888757 | ||
|
Protein |
rplY |
Experiment(s):EBI-888757 | ||
|
Protein |
rpmB |
Experiment(s):EBI-888757 | ||
|
Protein |
rpmG |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsB |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsD |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsE |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsG |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsI |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsJ |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsK |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsN |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsT |
Experiment(s):EBI-888757 | ||
|
Protein |
yagG |
Experiment(s):EBI-888757 | ||
|
Protein |
yfiF |
Experiment(s):EBI-888757 | ||
|
Protein |
yihR |
Experiment(s):EBI-888757 | ||
|
Protein |
rplU |
Experiment(s):EBI-888757 | ||
|
Protein |
rpsN |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplE |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplX |
LCMS(ID Probability):99.0 MALDI(Z-score):12.154008 | ||
|
Protein |
rpsI |
LCMS(ID Probability):99.6 | ||
|
Protein |
rpsM |
MALDI(Z-score):19.109181 | ||
|
Protein |
rplU |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplS |
LCMS(ID Probability):99.0 MALDI(Z-score):15.027321 | ||
|
Protein |
gyrA |
MALDI(Z-score):20.708604 | ||
|
Protein |
rpsC |
LCMS(ID Probability):99.0 MALDI(Z-score):19.388132 | ||
|
Protein |
hupA |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplA |
MALDI(Z-score):18.777277 | ||
|
Protein |
rfaD |
MALDI(Z-score):33.513134 | ||
|
Protein |
ypeA |
LCMS(ID Probability):99.6 | ||
|
Protein |
murE |
LCMS(ID Probability):99.0 | ||
|
Protein |
malP |
MALDI(Z-score):21.120618 | ||
|
Protein |
lon |
MALDI(Z-score):24.937062 | ||
|
Protein |
rplD |
LCMS(ID Probability):99.6 MALDI(Z-score):19.721490 | ||
|
Protein |
ycbZ |
MALDI(Z-score):26.982999 | ||
|
Protein |
yagG |
LCMS(ID Probability):99.0 | ||
|
Protein |
yihR |
LCMS(ID Probability):99.0 | ||
|
Protein |
rplL |
LCMS(ID Probability):99.6 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
cytoplasm |
From EcoCyc[3] |
| ||
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MKQKVVSIGD INVANDLPFV LFGGMNVLES RDLAMRICEH YVTVTQKLGI PYVFKASFDK ANRSSIHSYR GPGLEEGMKI FQELKQTFGV KIITDVHEPS QAQPVADVVD VIQLPAFLAR QTDLVEAMAK TGAVINVKKP QFVSPGQMGN IVDKFKEGGN EKVILCDRGA NFGYDNLVVD MLGFSIMKKV SGNSPVIFDV THALQCRDPF GAASGGRRAQ VAELARAGMA VGLAGLFIEA HPDPEHAKCD GPSALPLAKL EPFLKQMKAI DDLVKGFEEL DTSK |
| Length |
284 |
| Mol. Wt |
30.832 kDa |
| pI |
6.9 (calculated) |
| Extinction coefficient |
5,960 - 6,460 (calc based on 4 Y, 0 W, and 4 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
- ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 7.31 7.32 7.33 7.34 7.35 7.36 7.37 7.38 7.39 7.40 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
- ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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