insF-5:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insF-5 |
|---|---|
| Mnemonic | |
| Synonyms |
insF, ECK0299, b0299, JW0293, insF1, tra5-5, b0372, JW0363, insF2, tra5-1, b0541, JW0529, insF3, tra5-2, b1026, JW1012, insF4, tra5-3, b2089, JW2073, insF5, tra5-4, insF-1, insF-2, insF-3, insF-4[1][2][3] |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
6.79 minutes |
MG1655: 314811..315677 |
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NC_012967: 2883130..2883936 |
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NC_012967: 1615832..1616698 |
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NC_012967: 1608278..1609144 |
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NC_012967: 1442997..1443863 |
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NC_012967: 1110560..1111375 |
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NC_012759: 2061039..2061905 |
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NC_012759: 293722..294588 |
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NC_012759: 469121..469987 |
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NC_012759: 997242..998108 |
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W3110 |
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W3110: 314811..315677 |
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MG1655 |
8.43 minutes |
MG1655: 391829..390963 |
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W3110 |
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W3110: 391829..390963 |
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MG1655 |
12.21 minutes |
MG1655: 566361..567227 |
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W3110 |
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W3110: 566361..567227 |
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MG1655 |
23.57 minutes |
MG1655: 1094364..1093498 |
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W3110 |
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W3110: 1095563..1094697 |
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MG1655 |
46.74 minutes |
MG1655: 2168556..2169422 |
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W3110 |
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W3110: 2172669..2173535 |
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DH10B: 2259564..2260430 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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zef-3129::Tn10 |
Linked marker |
est. P1 cotransduction: % [7] | |
|
Linked marker |
est. P1 cotransduction: 78% [7] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
