ibpA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

IbpA

Synonyms

heat shock chaperone[1], B3687[2][1], HtpN[2][1], HslT[2][1], IbpA[2][1] , ECK3679, hslT, htpN, JW3664, b3687

Product description

small heat shock protein IbpA[2][3]

Chaperone, heat-inducible protein of HSP20 family[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_02000

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0050821

protein stabilization

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_02000

P

Seeded from EcoCyc (v14.0)

complete

GO:0009408

response to heat

PMID:8349564[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

add

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

atpD

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

clpA

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

ftsZ

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

gadA

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

gatY

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

ibpB

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106, EBI-885226

Protein

malK

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

malT

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

metK

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

mreB

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-893751

Protein

ompC

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

pflB

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

pnp

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

pstB

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

rpoB

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

rpoC

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-880023, EBI-885106

Protein

yjjL

PMID:15690043[6]

Experiment(s):EBI-880023

Protein

rpsF

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

uspA

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

uspG

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

ybiY

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

cbpM

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

clpB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

dnaJ

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

eno

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

gatA

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

gatB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

gpmA

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

hrpB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

infB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

lpdA

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

malZ

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

msbB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

prc

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

proS

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

radC

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

rpsA

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-885106

Protein

pflB

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

pnp

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

eno

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

clpA

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

infB

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

atpD

PMID:19402753[7]

MALDI(Z-score):17.053160

Protein

uspG

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

metK

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

uspA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

pstB

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

dnaJ

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):2.708161

Protein

cbpM

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ftsZ

PMID:19402753[7]

MALDI(Z-score):37.533852

Protein

gatB

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

malZ

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yicR

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

malT

PMID:19402753[7]

MALDI(Z-score):17.702644

Protein

add

PMID:19402753[7]

MALDI(Z-score):17.053160

Protein

gatY

PMID:19402753[7]

MALDI(Z-score):17.053160

Protein

malK

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):36.763598

Protein

ibpB

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):38.694244

Protein

ybiY

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yjjL

PMID:19402753[7]

MALDI(Z-score):17.053160

Protein

lpxM

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRNFDLSPLY RSAIGFDRLF NHLENNQSQS NGGYPPYNVE LVDENHYRIA IAVAGFAESE
LEITAQDNLL VVKGAHADEQ KERTYLYQGI AERNFERKFQ LAENIHVRGA NLVNGLLYID
LERVIPEAKK PRRIEIN
Length

137

Mol. Wt

15.773 kDa

pI

5.7 (calculated)

Extinction coefficient

10,430 (calc based on 7 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

39..137

PF00011 Hsp20/alpha crystallin family

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ibpA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131555

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948200

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012058

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0C054

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11534

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11534

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948200

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001488

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1496

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Chuang, SE & Blattner, FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175 5242-52 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 6.30 6.31 6.32 6.33 6.34 6.35 6.36 6.37 6.38 6.39 6.40 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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