hslO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HslO

Synonyms

heat shock protein Hsp33[1], B3401[2][1], YrfI[2][1], HslO[2][1], Hsp33[2][1] , ECK3388, JW5692, yrfI, b3401

Product description

molecular chaperone Hsp33[2][3]

Hsp33, oxidative stress-induced heat shock chaperone; C-terminal zinc-binding motif regulates Hsp33 activity[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0009408

response to heat

PMID:8349564[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-881279, EBI-888653

Protein

arcB

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

nikD

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsC

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsJ

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

rpsL

PMID:15690043[6]

Experiment(s):EBI-888653

Protein

arcB

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

nikD

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIMPQHDQLH RYLFENFAVR GELVTVSETL QQILENHDYP QPVKNVLAEL LVATSLLTAT
LKFDGDITVQ LQGDGPMNLA VINGNNNQQM RGVARVQGEI PENADLKTLV GNGYVVITIT
PSEGERYQGV VGLEGDTLAA CLEDYFMRSE QLPTRLFIRT GDVDGKPAAG GMLLQVMPAQ
NAQQDDFDHL ATLTETIKTE ELLTLPANEV LWRLYHEEEV TVYDPQDVEF KCTCSRERCA
DALKTLPDEE VDSILAEDGE IDMHCDYCGN HYLFNAMDIA EIRNNASPAD PQVH
Length

294

Mol. Wt

32.778 kDa

pI

4.2 (calculated)

Extinction coefficient

18,910 - 19,660 (calc based on 9 Y, 1 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..274

PF01430 Hsp33 protein

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hslO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111586

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947178

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011096

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6Y5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7744

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12930

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947178

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004287

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2766

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Chuang, SE & Blattner, FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175 5242-52 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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