hscB:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
HscB |
|---|---|
| Synonyms |
DnaJ-like molecular chaperone specific for IscU[1], B2527[2][1], YfhE[2][1], HscB[2][1], Hsc20[2][1] , ECK2524, JW2511, yfhE, b2527 |
| Product description |
Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly[2][3] Hsc20, DnaJ-like co-chaperone for HscA; specific for IscU[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
clpB |
Experiment(s):EBI-889252 | ||
|
Protein |
rpoC |
Experiment(s):EBI-889252 | ||
|
Protein |
tufA |
Experiment(s):EBI-889252, EBI-894305 | ||
|
Protein |
htpG |
Experiment(s):EBI-894305 | ||
|
Protein |
rplA |
Experiment(s):EBI-894305 | ||
|
Protein |
rplJ |
Experiment(s):EBI-894305 | ||
|
Protein |
rplK |
Experiment(s):EBI-894305 | ||
|
Protein |
rplL |
Experiment(s):EBI-894305 | ||
|
Protein |
rpmC |
Experiment(s):EBI-894305 | ||
|
Protein |
rpmG |
Experiment(s):EBI-894305 | ||
|
Protein |
rpsB |
Experiment(s):EBI-894305 | ||
|
Protein |
rpsG |
Experiment(s):EBI-894305 | ||
|
Protein |
rpsN |
Experiment(s):EBI-894305 | ||
|
Protein |
ugpB |
Experiment(s):EBI-894305 | ||
|
Protein |
dcuD |
Experiment(s):EBI-894305 | ||
|
Protein |
pepD |
Experiment(s):EBI-1143149 | ||
|
Protein |
tufB |
MALDI(Z-score):20.192411 | ||
|
Protein |
metK |
MALDI(Z-score):18.535481 | ||
|
Protein |
htpG |
LCMS(ID Probability):99.0 MALDI(Z-score):28.837684 | ||
|
Protein |
clpB |
MALDI(Z-score):28.627041 | ||
|
Protein |
clpX |
MALDI(Z-score):39.634700 | ||
|
Protein |
dcuD |
LCMS(ID Probability):99.0 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MDYFTLFGLP ARYQLDTQAL SLRFQDLQRQ YHPDKFASGS QAEQLAAVQQ SATINQAWQT LRHPLMRAEY LLSLHGFDLA SEQHTVRDTA FLMEQLELRE ELDEIEQAKD EARLESFIKR VKKMFDTRHQ LMVEQLDNET WDAAADTVRK LRFLDKLRSS AEQLEEKLLD F |
| Length |
171 |
| Mol. Wt |
20.137 kDa |
| pI |
4.9 (calculated) |
| Extinction coefficient |
16,960 (calc based on 4 Y, 2 W, and 0 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
- ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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