fldA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FldA

Synonyms

flavodoxin 1 [1], B0684 [2][1] , ECK0672, JW0671, b0684

Product description

flavodoxin 1[2][3]

Flavodoxin I[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001226

F

Seeded from EcoCyc (v14.0)

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001226

F

Seeded from EcoCyc (v14.0)

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008254

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:10978155[5]

IDA: Inferred from Direct Assay

C

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010086

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008254

F

Seeded from EcoCyc (v14.0)

complete

GO:0022900

electron transport chain

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc (v14.0)

complete

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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aidB

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

clpA

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

dnaN

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

ispG

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

lon

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

ubiX

PMID:15690043[6]

Experiment(s):EBI-888637

Protein

rpsE

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

rplB

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

nrdI

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

ribB

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

idnO

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

hns

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

helD

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

rpmB

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

fadR

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

rplV

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

rpsB

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

spoT

PMID:16606699[7]

Experiment(s):EBI-1137688

Protein

clpA

PMID:19402753[8]

MALDI(Z-score):27.516383

Protein

aidB

PMID:19402753[8]

MALDI(Z-score):28.326700

Protein

ubiX

PMID:19402753[8]

MALDI(Z-score):38.467794

Protein

ispG

PMID:19402753[8]

MALDI(Z-score):39.528159

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAITGIFFGS DTGNTENIAK MIQKQLGKDV ADVHDIAKSS KEDLEAYDIL LLGIPTWYYG
EAQCDWDDFF PTLEEIDFNG KLVALFGCGD QEDYAEYFCD ALGTIRDIIE PRGATIVGHW
PTAGYHFEAS KGLADDDHFV GLAIDEDRQP ELTAERVEKW VKQISEELHL DEILNA
Length

176

Mol. Wt

19.737 kDa

pI

4.1 (calculated)

Extinction coefficient

30,940 - 31,315 (calc based on 6 Y, 4 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P61949

Domain

6..160

PF00258 Flavodoxin

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fldA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128660

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945293

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002332

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P61949

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10318

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10318

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945293

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000312

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0314

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Hall, DA et al. (2000) Interaction of flavodoxin with cobalamin-dependent methionine synthase. Biochemistry 39 10711-9 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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