eutB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EutB

Synonyms

ethanolamine ammonia-lyase, large subunit, heavy chain[1], B2441[2][1], EutB[2][1] , ECK2436, JW2434, b2441

Product description

ethanolamine ammonia-lyase, probable regulatory subunit[2][3];

Component of ethanolamine ammonia-lyase[2][3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0006520

cellular amino acid metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010628

P

Seeded from EcoCyc (v14.0)

complete

GO:0008851

ethanolamine ammonia-lyase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010628

F

Seeded from EcoCyc (v14.0)

complete

GO:0008851

ethanolamine ammonia-lyase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.3.1.7

F

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc (v14.0)

complete

GO:0050897

cobalt ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0170

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ethanolamine ammonia-lyase

could be indirect

Protein

groL

PMID:16606699[4]

Experiment(s):EBI-1142851
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNANHRFFL RERLMKLKTT LFGNVYQFKD VKEVLAKANE LRSGDVLAGV AAASSQERVA
AKQVLSEMTV ADIRNNPVIA YEDDCVTRLI QDDVNETAYN QIKNWSISEL REYVLSDETS
VDDIAFTRKG LTSEVVAAVA KICSNADLIY GAKKMPVIKK ANTTIGIPGT FSARLQPNDT
RDDVQSIAAQ IYEGLSFGVG DAVIGVNPVT DDVENLSRVL DTIYGVIDKF NIPTQGCVLA
HVTTQIEAIR RGAPGGLIFQ SICGSEKGLK EFGVELAMLD EARAVGAEFN RIAGENCLYF
ETGQGSALSA GANFGADQVT MEARNYGLAR HYDPFIVNTV VGFIGPEYLY NDRQIIRAGL
EDHFMGKLSG ISMGCDCCYT NHADADQNLN ENLMILLATA GCNYIMGMPL GDDIMLNYQT
TAFHDTATVR QLLNLRPSPE FERWLESMGI MANGRLTKRA GDPSLFF
Length

467

Mol. Wt

51.217 kDa

pI

4.9 (calculated)

Extinction coefficient

33,350 - 34,475 (calc based on 15 Y, 2 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

11..452

PF06751 Ethanolamine ammonia lyase large subunit (EutB)

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=eutB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111437

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946924

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008046

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AEJ6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG50006

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG50006

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002565

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4299

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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