cdaR:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
CdaR |
|---|---|
| Synonyms |
DNA-binding transcriptional activator[1], B0162[2][1], SdaR[2][1], CdaR[2][1], YaeG[2][1] , ECK0161, JW5013, sdaR, yaeG, b0162 |
| Product description |
CdaR transcriptional activator[2][3] Transcriptional regulator for gar and gud operons[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003700 |
transcription factor activity |
IMP: Inferred from Mutant Phenotype |
F |
Seeded from EcoCyc (v14.0) |
complete | |||
| GO:0003700 |
transcription factor activity |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P0ACI3 |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016563 |
transcription activator activity |
IMP: Inferred from Mutant Phenotype |
F |
Seeded from EcoCyc (v14.0) |
complete | |||
| GO:0016563 |
transcription activator activity |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P0ACI3 |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0043193 |
positive regulation of gene-specific transcription |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc (v14.0) |
complete | |||
| GO:0043193 |
positive regulation of gene-specific transcription |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P0ACI3 |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MHNGGLMAGW HLDTKMAQDI VARTMRIIDT NINVMDARGR IIGSGDRERI GELHEGALLV LSQGRVVDID DAVARHLHGV RQGINLPLRL EGEIVGVIGL TGEPENLRKY GELVCMTAEM MLEQSRLMHL LAQDSRLREE LVMNLIQAEE NTPALTEWAQ RLGIDLNQPR VVAIVEVDSG QLGVDSAMAE LQQLQNALTT PERNNLVAIV SLTEMVVLKP ALNSFGRWDA EDHRKRVEQL ITRMKEYGQL RFRVSLGNYF TGPGSIARSY RTAKTTMVVG KQRMPESRCY FYQDLMLPVL LDSLRGDWQA NELARPLARL KTMDNNGLLR RTLAAWFRHN VQPLATSKAL FIHRNTLEYR LNRISELTGL DLGNFDDRLL LYVALQLDEE R |
| Length |
391 |
| Mol. Wt |
44.297 kDa |
| pI |
6.8 (calculated) |
| Extinction coefficient |
39,420 - 39,670 (calc based on 8 Y, 5 W, and 2 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Monterrubio, R et al. (2000) A common regulator for the operons encoding the enzymes involved in D-galactarate, D-glucarate, and D-glycerate utilization in Escherichia coli. J. Bacteriol. 182 2672-4 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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