atpC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AtpC

Synonyms

F1 sector of membrane-bound ATP synthase, epsilon subunit[1], B3731[2][1], Unc[2][1], UncC[2][1], PapG[2][1], AtpC[2][1] , ECK3724, JW3709, papG, uncC, b3731

Product description

ATP synthase, F1 complex, ε subunit[2][3];

Component of ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

ATP synthase subunit epsilon, membrane-bound, F1 sector[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00530

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

PMID:2863270[5]

IDA: Inferred from Direct Assay

F

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

PMID:6238948[6]

IDA: Inferred from Direct Assay

C

Component of F1 ATPase complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncH (delta) - for review see Chapter 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001469

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020546

P

Seeded from EcoCyc (v14.0)

complete

GO:0015986

ATP synthesis coupled proton transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020547

P

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0042777

plasma membrane ATP synthesis coupled proton transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00530

P

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001469

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020546

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020547

C

Seeded from EcoCyc (v14.0)

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0139

C

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00530

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001469

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020546

F

Seeded from EcoCyc (v14.0)

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020547

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001469

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020546

F

Seeded from EcoCyc (v14.0)

complete

GO:0046961

proton-transporting ATPase activity, rotational mechanism

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020547

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ATP synthase, F1 complex

could be indirect

Protein

rpmB

PMID:16606699[7]

Experiment(s):EBI-1146601

Protein

yjhR

PMID:16606699[7]

Experiment(s):EBI-1146601

Protein

atpD

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

atpA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

Subunits of ATP synthase

could be indirect
epsilon (AtpC) & delta (AtpH) are not required for F0 assembly, whereas alpha, beta and gamma from F1 are essential assembly. See PMID:6238948[6] (Fig 4) for epsilon, PMID:6294057[9] (Fig 2) for delta.


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]

Cytoplasm

PMID:9868784[10]

EchoLocation:atpC


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAMTYHLDVV SAEQQMFSGL VEKIQVTGSE GELGIYPGHA PLLTAIKPGM IRIVKQHGHE
EFIYLSGGIL EVQPGNVTVL ADTAIRGQDL DEARAMEAKR KAEEHISSSH GDVDYAQASA
ELAKAIAQLR VIELTKKAM
Length

139

Mol. Wt

15.067 kDa

pI

5.6 (calculated)

Extinction coefficient

5,960 (calc based on 4 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A6E6

Domain

88..135

PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain

PMID:19920124[11]

Domain

5..84

PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain

PMID:19920124[11]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131599

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948245

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012206

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6E6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10100

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10100

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948245

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000096

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0098

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed
  6. ↑ 6.0 6.1 Klionsky, DJ et al. (1984) In vivo evidence for the role of the epsilon subunit as an inhibitor of the proton-translocating ATPase of Escherichia coli. J. Bacteriol. 160 1055-60 PubMed
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Humbert, R et al. (1983) Escherichia coli mutants defective in the uncH gene. J. Bacteriol. 153 416-22 PubMed
  10. ↑ Wasinger, VC & Humphery-Smith, I (1998) Small genes/gene-products in Escherichia coli K-12. FEMS Microbiol. Lett. 169 375-82 PubMed
  11. ↑ 11.0 11.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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