anmK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdhH

Synonyms

conserved protein[1], B1640[2][1], YdhH[2][1], AnmK[2][1] , ECK1636, JW1632, ydhH, b1640

Product description

anhydro-N-acetylmuramic acid kinase[2][3]

Anhydro-N-acetylmuramic acid kinase, murein recycling[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01270

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005338

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0119

P

Seeded from EcoCyc (v14.0)

complete

GO:0006040

amino sugar metabolic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01270

P

Seeded from EcoCyc (v14.0)

complete

GO:0006040

amino sugar metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005338

P

Seeded from EcoCyc (v14.0)

complete

GO:0009254

peptidoglycan turnover

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01270

P

Seeded from EcoCyc (v14.0)

complete

GO:0009254

peptidoglycan turnover

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005338

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01270

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005338

F

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.1

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

hycF

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

nohB

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

bioC

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

hemG

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

secD

PMID:16606699[5]

Experiment(s):EBI-1140357

Protein

AnmK

Homodimer

Structure, analytical ultracentrifugation

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKSGRFIGVM SGTSLDGVDV VLATIDEHRV AQLASLSWPI PVSLKQAVLD ICQGQQLTLS
QFGQLDTQLG QLFADAVNAL LKEQNLQARD IVAIGCHGQT VWHEPTGVAP HTLQIGDNNQ
IVARTGITVV GDFRRRDIAL GGQGAPLVPA FHHALLAHPT ERRMVLNIGG IANLSLLIPG
QPVGGYDTGP GNMLMDAWIW RQAGKPYDKD AEWARAGKVI LPLLQNMLSD PYFSQPAPKS
TGREYFNYGW LERHLRHFPG VDPRDVQATL AELTAVTISE QVLLSGGCER LMVCGGGSRN
PLLMARLAAL LPGTEVTTTD AVGISGDDME ALAFAWLAWR TLAGLPGNLP SVTGASQETV
LGAIFPANP
Length

369

Mol. Wt

39.496 kDa

pI

6.1 (calculated)

Extinction coefficient

51,450 - 51,950 (calc based on 5 Y, 8 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..367

PF03702 Uncharacterised protein family (UPF0075)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=anmK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

AnmK is a homodimer.

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129598

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946810

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005488

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77570

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6880

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13942

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946810

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003469

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3700

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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