Plasmid F traA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
Plasmid F traA |
|---|---|
| Mnemonic | |
| Synonyms |
traA, Fpla076 |
| edit table |
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table. </protect>
Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_002483 |
NC_002483: 68265..68630 |
|||
| edit table |
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table. </protect>
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki. <protect></protect>
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
traAK100A |
K100A |
Reduced cleavage of propilin to pilin; when associated with A-97 |
seeded from UniProt:P04737 | ||||
|
traAF101A |
F101A |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse. Reduced DNA transfer |
seeded from UniProt:P04737 | ||||
|
traAF105V |
F105V |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse. Reduced DNA transfer |
seeded from UniProt:P04737 | ||||
|
traAF111V |
F111V |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse. Reduced DNA transfer |
seeded from UniProt:P04737 | ||||
|
traAG120D |
G120D |
Resistant to phages R17 and QB attachment |
seeded from UniProt:P04737 | ||||
|
traAD58A |
D58A |
No production of propilin or pilin |
seeded from UniProt:P04737 | ||||
|
traAG9S |
G9S |
No production of pili |
seeded from UniProt:P04737 | ||||
|
traAP13S |
P13S |
No production of pili |
seeded from UniProt:P04737 | ||||
|
traAK68A |
K68A |
No production of propilin or pilin |
seeded from UniProt:P04737 | ||||
|
traAF71V |
F71V |
No effect on propilin synthesis. Defective pilus tip assembly |
seeded from UniProt:P04737 | ||||
|
traAK79A |
K79A |
No effect on propilin synthesis. Resistant to phage R17 attachment |
seeded from UniProt:P04737 | ||||
|
traAD74G |
D74G |
No effect on propilin synthesis. No effect on pilus formation. Resistant to phage R17 attachment |
seeded from UniProt:P04737 | ||||
|
traAL121S |
L121S |
No effect on propilin synthesis. Defective pilus tip assembly |
seeded from UniProt:P04737 | ||||
|
traAA69E |
A69E |
No effect on propilin synthesis. No effect on pilus formation. Resistant to phage R17 attachment |
seeded from UniProt:P04737 | ||||
|
traAK68E |
K68E |
Resistant to phage R17 attachment |
seeded from UniProt:P04737 | ||||
|
traAG72D |
G72D |
No effect on propilin synthesis. No effect on pilus formation |
seeded from UniProt:P04737 | ||||
|
traAK73A,T |
K73A,T |
No effect on propilin synthesis. No effect on pilus formation |
seeded from UniProt:P04737 | ||||
|
traAK79I |
K79I |
No effect on propilin synthesis. Defective pilus tip assembly |
seeded from UniProt:P04737 | ||||
|
traAV81I |
V81I |
Slightly reduced phage R17 attachment, reduced ability to retract |
seeded from UniProt:P04737 | ||||
|
traAE85A,G |
E85A,G |
No effect on propilin synthesis. Defective pilus tip assembly |
seeded from UniProt:P04737 | ||||
|
traAY93D |
Y93D |
Production of small amounts of propilin and pilin |
seeded from UniProt:P04737 | ||||
|
traAK97A,R,V |
K97A,R,V |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse |
seeded from UniProt:P04737 | ||||
|
traAK97A |
K97A |
Reduced cleavage of propilin to pilin; when associated with A-100 |
seeded from UniProt:P04737 | ||||
|
traAN98A |
N98A |
No effect on propilin synthesis. No effect on pilus formation |
seeded from UniProt:P04737 | ||||
|
traAV99A |
V99A |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse |
seeded from UniProt:P04737 | ||||
|
traAK100A,R,T |
K100A,R,T |
No effect on propilin synthesis. No effect on pilus formation. Inability to support R17 phage eclipse. Reduced DNA transfer |
seeded from UniProt:P04737 | ||||
| edit table |
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki. <protect></protect>
Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
See Help:Gene_resources for help entering information into the Genetic Resources table. <protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
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See Help:Gene_accessions for help with entering information into the Gene Accessions table. <protect></protect>
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
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References
See Help:References for how to manage references in EcoliWiki.
