Plasmid F finO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

finO

Synonyms

finO, Fpla003

Product description
EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003723

RNA binding

PMID:12088153[1]

IDA: Inferred from Direct Assay

F

complete

GO:0046999

regulation of conjugation

PMID:14633993[2]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0034057

RNA strand-exchange activity

PMID:14633993[2]

IMP: Inferred from Mutant Phenotype

F

See Table 1 and Fig. 2.

complete

GO:0033592

RNA strand annealing activity

PMID:14633993[2]

IMP: Inferred from Mutant Phenotype

F

See Table 1 and Fig. 4.

complete

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

</protect>


Notes

Localization

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Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence
Length
Mol. Wt
pI
Extinction coefficient

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

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Type Residues Description Notes References
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
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Structures

<beststructure> gene=Plasmid_F_finO taxon=2465 </beststructure>

Models

View models at:

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</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. <protect></protect>

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Ghetu, AF et al. (2002) Probing FinO-FinP RNA interactions by site-directed protein-RNA crosslinking and gelFRET. RNA 8 816-23 PubMed
  2. 2.0 2.1 2.2 Arthur, DC et al. (2003) FinO is an RNA chaperone that facilitates sense-antisense RNA interactions. EMBO J. 22 6346-55 PubMed

Categories

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