Phage lambda D:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

D

Synonyms

D, lambdap07

Product description

head-DNA stabilization protein

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019030

icosahedral viral capsid

PMID:4509659[1]

IDA: Inferred from Direct Assay

C

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MTSKETFTHY QPQGNSDPAH TATAPGGLSA KAPAMTPLML DTSSRKLVAW DGTTDGAAVG
ILAVAADQTS TTLTFYKSGT FRYEDVLWPE AASDETKKRT AFAGTAISIV
Length

110

Mol. Wt

11.571 kDa

pI

5.9 (calculated)

Extinction coefficient

15,470 (calc based on 3 Y, 2 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_D taxon=10710 </beststructure>

Models

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</protect>

Structure figures

See Help:Jmol in EcoliWiki

Biological unit of protein D, PDB:1VD0
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >1VD0.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>









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Notes

See NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD[2] or PDB:1VD0.

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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  1. ↑ Kaiser, D & Masuda, T (1973) In vitro assembly of bacteriophage Lambda heads. Proc. Natl. Acad. Sci. U.S.A. 70 260-4 PubMed
  2. ↑ Iwai, H et al. (2005) NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD. J. Biomol. NMR 31 351-6 PubMed

Categories

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