Phage T5 002:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

002

Gene Synonym(s)
Product Desc.
non-experimental evidence, no additional details recorded
Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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Notes

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References

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Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

002

Mnemonic
Synonyms


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</protect>

Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_005859: 149..2124
gbrowse_img.php?coord=149..2124&genome=bacteriophage_t5&name=NC_005859&trackset=0&width=300&.png

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</protect>

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

hypothetical protein

Synonyms
Product description
non-experimental evidence, no additional details recorded
EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAKSNRIPFD RAQSSIVLVY SNGQRYHVEA GHVIDELLDF NDAMQVTTFA YMQGKLTSHI
KAKGVYVDTM KQETIIIDAV KSGLAFAVVA PCPACLDDQL MSAKVYTCAG IRSSVSGEDV
SFIADALAYG L
 
MAKSNRIPFD RAQSSIVLVY SNGQRYHVEA GHVIDELLDF NDAMQVTTFA YMQGKLTSHI
KAKGVYVDTM KQETIIIDAV KSGLAFAVVA PCPACLDDQL MSAKVYTCAG IRSSVSGEDV
SFIADALAYG L
Length

131

131

Mol. Wt

14.184 kDa

14.184 kDa

pI

5.7 (calculated)

5.7 (calculated)

Extinction coefficient

8,940 - 9,315 (calc based on 6 Y, 0 W, and 3 C residues)

8,940 - 9,315 (calc based on 6 Y, 0 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_T5_002 taxon=10726 </beststructure>

Models

View models at:

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</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.


Categories


Expression


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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

{{{OVERVIEW}}}

Cellular Levels


{{{MOLECULES_PER_CELL_TABLE}}}

Notes

Transcription and Transcriptional Regulation


{{{OPERONS_TABLE}}} {{{RegulonDB_figure}}}

Notes

{{{TRANSCRIPTION_NOTES}}}

Translation and Regulation of Translation


gbrowse_img.php?coord=1314..1354&genome=bacteriophage_t5&name=NC_005859&trackset=Gene+DNA_+Protein+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

{{{TRANSLATION_NOTES}}}

Turnover and Regulation of Turnover

</protect>

Notes

{{{TURNOVER_NOTES}}}

Experimental


Mutations Affecting Expression {{{EXPRESSION_ALLELE_TABLE}}}

Expression Studies

{{{EXPRESSION_STUDIES_TABLE}}}

Expression Resources

{{{EXPRESSION_RESOURCE_TABLE}}} <protect>

Notes

{{{EXPRESSION_EXPERIMENTAL_NOTES}}}

Accessions Related to Phage_T5_002 Expression


{{{GENE_ACCESSIONS_TABLE}}}

Notes

{{{EXPRESSION_ACCESSIONS_NOTES}}}

Links


{{{LINKS}}}

References


See Help:References for how to manage references in EcoliWiki.


Categories


{{{CATEGORIES}}}

Evolution


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Homologs Families Links References Suggestions

Homologs in Other Organisms


{{{EVOLUTION_HOMOLOGS_TABLE}}}

Do-It-Yourself Web Tools


Notes

{{{HOMOLOGY_NOTES}}}

Families


{{{EVOLUTION_FAMILIES_TABLE}}}

Notes

{{{FAMILIES_NOTES}}}

Links


{{{LINKS}}}

References


See Help:References for how to manage references in EcoliWiki.


Categories


{{{CATEGORIES}}}

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