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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	c
Gene Synonym(s)	Mup01^[1], 1, Phage_Mu_c, Phage_Mu_01
Product Desc.	c-repressor ^[1]; (putative) transcription regulation ^[2]; significant homology to D108 putative repressor and MuA DNA binding domain ^[2]
Product Synonyms(s)	c-repressor ^[1], Mup01^[1]
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1 Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content
↑ ^2.0 ^2.1 Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

Gene

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Gene

Location(s) and DNA Sequence

Sequence Features

Alleles and Phenotypes

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	c
Mnemonic	c-repressor
Synonyms	Mup01^[1], 1, Phage_Mu_c, Phage_Mu_01
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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Genome coordinates	Genome browsers	Sequence links
BW2952	NC_012759: 4131538..4132128 <gbrowseImage> name=NC_012759:4131538..4132128 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
	NC_000929: 0..1911 <gbrowseImage> name=NC_000929:0..1911 source=bacteriophage_Mu preset=GeneLocation </gbrowseImage>	GBrowse (Phage_Mu)	FASTA Dump
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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (EcoliWiki Page)	GeneID:2636266
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1

Categories

Product(s)

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Gene Product(s)

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	c
Synonyms	c-repressor ^[1], Mup01^[1]
Product description	c-repressor ^[1]; (putative) transcription regulation ^[2]; significant homology to D108 putative repressor and MuA DNA binding domain ^[2]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MAADGMPGSV AGVHYRANVQ GWTKQKKEGV KGGKAVEYDV MSMPTKEREQ VIAHLGLSTP DTGAQANEKQ DSSELINKLT TTLINMIEEL EPDEARKALK LLSKGGLLAL MPLVFNEQKL YSFIGFSQQS IQTLMMLDAL PEEKRKEILS KYGIHEQESV VVPSQEPQEV KKAV
Length	174
Mol. Wt	19.212 kDa
pI	5.9 (calculated)
Extinction coefficient	11,460 (calc based on 4 Y, 1 W, and C residues)
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Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
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<motif_map/>

Structure <protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_Mu_01 taxon=10677 </beststructure>

Models

View models at:

PSI-PRED
Genomes TO Protein (GTOP)

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1 Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content
↑ ^2.0 ^2.1 Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

Categories

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Expression

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Expression

Overview

Intracellular Levels

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<protect> See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000929:843..883 source=bacteriophage_Mu flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to Phage_Mu_c Expression

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

Categories

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Evolution

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Evolution

Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
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Do-It-Yourself Web Tools

Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database	Accession	Notes
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

Categories

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[NC_000929.1-1] 1.0 ^1.1 ^1.2 ^1.3 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1 Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content

[PMID:11922669-2] 2.0 ^2.1 Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

[NC_000929.1-3] NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1

[NC_000929.1-4] 1.0 ^1.1 ^1.2 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1 Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_000929.1" defined multiple times with different content

[PMID:11922669-5] 2.0 ^2.1 Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

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Phage Mu c:On One Page

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Notes

References

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Expression

Overview

Intracellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to Phage_Mu_c Expression

Notes

Links

References

Categories

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

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