arnA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
arnA |
|---|---|
| Mnemonic |
ara4N (4-amino-4-deoxy-L-arabinose) |
| Synonyms | |
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Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
51 minutes |
MG1655: 2366061..2368043 |
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|
NC_012967: 2314552..2316534 |
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NC_012759: 2251866..2253848 |
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|
W3110 |
|
W3110: 2372709..2374691 |
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|
DH10B: 2457049..2459031 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
arnAR619M |
R619M |
400-fold lower activity |
seeded from UniProt:P77398 | ||||
|
arnAR619E,Y |
R619E,Y |
No activity |
seeded from UniProt:P77398 | ||||
|
arnAE434Q |
E434Q |
No activity |
seeded from UniProt:P77398 | ||||
|
arnAS433T |
S433T |
No activity |
seeded from UniProt:P77398 | ||||
|
arnAE434A |
E434A |
100-fold lower specific activity |
seeded from UniProt:P77398 | ||||
|
arnAD140A,N |
D140A,N |
Less than 1% residual activity |
seeded from UniProt:P77398 | ||||
|
arnAS433A |
S433A |
40-fold lower specific activity |
seeded from UniProt:P77398 | ||||
|
arnAH104K |
H104K |
Less than 1% residual activity |
seeded from UniProt:P77398 | ||||
|
arnAN102A |
N102A |
No activity |
seeded from UniProt:P77398 | ||||
|
arnAH104A |
H104A |
25-fold lower activity |
seeded from UniProt:P77398 | ||||
|
ΔarnA736::kan |
| ||||||
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed