cspE:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
CspE product |
|---|---|
| Synonyms |
DNA-binding transcriptional repressor product[1], B0623 product[2][1], MsmC product[2][1], GicA product[2][1], CspE product[2][1] |
| Product description |
cold shock protein CspE[2]; transcription antiterminator and regulator of RNA stability[3] |
| EC number (for enzymes) |
|
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
|
GO:0006950 |
response to stress |
P |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
|
GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
|
GO:0030401 |
transcription antiterminator activity |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
|
GO:0008143 |
poly(A) binding |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
|
GO:0003697 |
single-stranded DNA binding |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQTNG FKTLAEGQRV EFEITNGAKG PSAANVIAL |
|---|---|
| Mol. Wt |
7.46 kDa (calc) [2] |
| pI |
8.2[3] |
| Extinction coefficient |
5500 (calc based on 0 Y, 1 W, and 0 C residues) |
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Bae, W et al. (2000) Escherichia coli CspA-family RNA chaperones are transcription antiterminators. Proc. Natl. Acad. Sci. U.S.A. 97 7784-9 PubMed
- ↑ Feng, Y et al. (2001) Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E. J. Biol. Chem. 276 31651-6 PubMed
- ↑ Johnston, D et al. (2006) Specificity of DNA binding and dimerization by CspE from Escherichia coli. J. Biol. Chem. 281 40208-15 PubMed