Plasmid F traJ:Gene Product(s): Difference between revisions

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|-
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!align=left {{table heading style}} |Standard name
!align=left |Standard name
||
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traJ  
traJ  
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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traJ, Fpla074  
traJ, Fpla074  
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!align=left {{table heading style}} |Product description
!align=left |Product description
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traJ
traJ
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this activator promotes transcription initiation upstream of the traY gene in the transfer operon  
this activator promotes transcription initiation upstream of the traY gene in the transfer operon  
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|-
!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!|Partner Type!!Partner!!Notes!!References!!Evidence
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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<pre>MYPMDRIQQK HARQIDLLEN LTAVIQDYPN PACIRDETGK FIFCNTLFHE SFLTQDQSAE
<pre>MYPMDRIQQK HARQIDLLEN LTAVIQDYPN PACIRDETGK FIFCNTLFHE SFLTQDQSAE
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ISISTSKKHA SLICDYFSVS NKDELIILLY NKKFIYYLYE KAMCIINTR</pre>
ISISTSKKHA SLICDYFSVS NKDELIILLY NKKFIYYLYE KAMCIINTR</pre>
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!align=left {{table heading style}} |Length
!align=left |Length
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229
229
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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27.062 kDa
27.062 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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6.9 (calculated)
6.9 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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35,870 - 36,495 (calc based on 13 Y, 3 W, and 5 C residues)
35,870 - 36,495 (calc based on 13 Y, 3 W, and 5 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 03:38, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

traJ

Synonyms

traJ, Fpla074

Product description

traJ

this activator promotes transcription initiation upstream of the traY gene in the transfer operon

EC number (for enzymes)


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Notes

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

PMID:3514611[1]

IDA: Inferred from Direct Assay

C

complete

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Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence 
MYPMDRIQQK HARQIDLLEN LTAVIQDYPN PACIRDETGK FIFCNTLFHE SFLTQDQSAE
KWLLSQRDFC ELISVTEMEA YRNEHTHLNL VEDVFIQNRF WTISVQSFLN GHRNIILWQF
YDAAHVRHKD SYNQKTIVSD DIRNIIRRMS DDSSVSSYVN DVFYLYSTGI SHNAIARILN
ISISTSKKHA SLICDYFSVS NKDELIILLY NKKFIYYLYE KAMCIINTR
Length

229

Mol. Wt

27.062 kDa

pI

6.9 (calculated)

Extinction coefficient

35,870 - 36,495 (calc based on 13 Y, 3 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
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Structures

<beststructure> gene=Plasmid_F_traJ taxon=2465 </beststructure>

Models

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Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Cuozzo, M & Silverman, PM (1986) Characterization of the F plasmid TraJ protein synthesized in F' and Hfr strains of Escherichia coli K-12. J. Biol. Chem. 261 5175-9 PubMed

Categories

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