trpS:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Add jmol applet area.
Updating Product_structure_table
Line 699: Line 699:
!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>trpS
<beststructure>
562</beststructure>
gene=trpS
 
taxon=562,83333
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=trpS&sub=keywordSearc EcoliPredict]
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=trpS&organism=562&organismtext= ModBase]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)

Revision as of 23:38, 25 August 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TrpS

Synonyms

tryptophanyl-tRNA synthetase[1], B3384[2][1], TrpS[2][1]

Product description

tryptophanyl-tRNA synthetase[2][3];

Component of tryptophanyl-tRNA synthetase[2][3]

Tryptophan--tRNA ligase[4]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016874

ligase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

Seeded from EcoCyc [5]

complete

GO:0006436

tryptophanyl-tRNA aminoacylation

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR002306
HAMAP:MF_00140

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0006418

tRNA aminoacylation for protein translation

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305

P

Seeded from EcoCyc [5]

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0648

P

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0067
HAMAP:MF_00140

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004830

tryptophan-tRNA ligase activity

GO_REF:0000002
GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR002306
EC:6.1.1.2
HAMAP:MF_00140

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004812

aminoacyl-tRNA ligase activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
SP_KW:KW-0030

F

Seeded from EcoCyc [5]

complete

GO:0000166

nucleotide binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0547

F

Seeded from EcoCyc [5]

complete

GO:0000166

nucleotide binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0547

F

Seeded from EcoCyc

complete

GO:0004812

aminoacyl-tRNA ligase activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
SP_KW:KW-0030

F

Seeded from EcoCyc

complete

GO:0004830

tryptophan-tRNA ligase activity

GO_REF:0000020
GO_REF:0000002
GO_REF:0000003

IEA: Inferred from Electronic Annotation

HAMAP:MF_00140
InterPro:IPR002306
EC:6.1.1.2

F

Seeded from EcoCyc

complete

GO:0005524

ATP binding

GO_REF:0000020
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

HAMAP:MF_00140
InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0067

F

Seeded from EcoCyc

complete

GO:0005737

cytoplasm

GO_REF:0000020
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

HAMAP:MF_00140
InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0963
SP_SL:SL-0086

C

Seeded from EcoCyc

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305
InterPro:IPR002306
SP_KW:KW-0648

P

Seeded from EcoCyc

complete

GO:0006418

tRNA aminoacylation for protein translation

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001412
InterPro:IPR002305

P

Seeded from EcoCyc

complete

GO:0006436

tryptophanyl-tRNA aminoacylation

GO_REF:0000020
GO_REF:0000002

IEA: Inferred from Electronic Annotation

HAMAP:MF_00140
InterPro:IPR002306

P

Seeded from EcoCyc

complete

GO:0016874

ligase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

Seeded from EcoCyc

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of tryptophanyl-tRNA synthetase

could be indirect

Protein

rplM

PMID:15690043[7]

Experiment(s):EBI-891201

Protein

rplV

PMID:15690043[7]

Experiment(s):EBI-891201

Protein

rpsB

PMID:15690043[7]

Experiment(s):EBI-891201

Protein

rpsE

PMID:15690043[7]

Experiment(s):EBI-891201

Protein

nadE

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

ppk

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

rplC

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

ddg

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

map

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

rpsD

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

selD

PMID:16606699[8]

Experiment(s):EBI-1145723

Protein

lasT

PMID:16606699[8]

Experiment(s):EBI-1145723

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MTKPIVFSGA QPSGELTIGN YMGALRQWVN MQDDYHCIYC IVDQHAITVR QDAQKLRKAT
LDTLALYLAC GIDPEKSTIF VQSHVPEHAQ LGWALNCYTY FGELSRMTQF KDKSARYAEN
INAGLFDYPV LMAADILLYQ TNLVPVGEDQ KQHLELSRDI AQRFNALYGE IFKVPEPFIP
KSGARVMSLL EPTKKMSKSD DNRNNVIGLL EDPKSVVKKI KRAVTDSDEP PVVRYDVQNK
AGVSNLLDIL SAVTGQSIPE LEKQFEGKMY GHLKGEVADA VSGMLTELQE RYHRFRNDEA
FLQQVMKDGA EKASAHASRT LKAVYEAIGF VAKP
Length

334

Mol. Wt

37.437 kDa

pI

6.7 (calculated)

Extinction coefficient

31,860 - 32,360 (calc based on 14 Y, 2 W, and 4 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=trpS taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:TRPS-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P00954

UniProt (EcoliWiki Page)

UniProt:P00954

PFAM (EcoliWiki Page)

PFAM:PF00579

RefSeq (EcoliWiki Page)

RefSeq:NP_417843

ModBase (EcoliWiki Page)

ModBase:P00954


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=trpS:Gene_Product(s)&oldid=932540"