flgM:Gene Product(s): Difference between revisions

Standard name	FlgM
Synonyms	anti-sigma factor for FliA (sigma 28)^[1], B1071^[2]^[1], FlgM^[2]^[1]
Product description	anti-sigma factor for FliA (sigma 28)^[2]^[3] Anti-sigma 28 (FliA) factor; regulator of FlhD^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0019861	flagellum	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR007412 SP_KW:KW-0282	C	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0016564	transcription repressor activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007412	F	Seeded from EcoCyc ^[6]	complete
	GO:0016481	negative regulation of transcription	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007412	P	Seeded from EcoCyc ^[6]	complete
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P	Seeded from EcoCyc ^[6]	complete
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc ^[6]	complete
	GO:0042330	taxis				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc	complete
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805	P	Seeded from EcoCyc	complete
	GO:0016481	negative regulation of transcription	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007412	P	Seeded from EcoCyc	complete
	GO:0016564	transcription repressor activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007412	F	Seeded from EcoCyc	complete
	GO:0019861	flagellum	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR007412	C	Seeded from EcoCyc	complete
	GO:0005737	cytoplasm				C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016989	sigma factor antagonist activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	fliA	PMID:16606699^[7]	Experiment(s):EBI-1138760
Protein	gltX	PMID:16606699^[7]	Experiment(s):EBI-1138760
Protein	yahG	PMID:16606699^[7]	Experiment(s):EBI-1138760
Protein	tatE	PMID:16606699^[7]	Experiment(s):EBI-1138760
Protein	pepD	PMID:16606699^[7]	Experiment(s):EBI-1138760
Protein	dnaK	PMID:16606699^[7]	Experiment(s):EBI-1138760
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MSIDRTSPLK PVSTVQPRET TDAPVTNSRA AKTTASTSTS VTLSDAQAKL MQPGSSDINL ERVEALKLAI RNGELKMDTG KIADALINEA QQDLQSN
Length	97
Mol. Wt	10.34 kDa
pI	5.2 (calculated)
Extinction coefficient	0 (calc based on Y, W, and C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
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<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G369-MONOMER
UniProt (EcoliWiki Page)	UniProt:P0AEM4
PFAM (EcoliWiki Page)	PFAM:PF04316
RefSeq (EcoliWiki Page)	RefSeq:NP_415589
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^6.0 ^6.1 ^6.2 ^6.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^7.0 ^7.1 ^7.2 ^7.3 ^7.4 ^7.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

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 ==References==
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 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
 [[Category:GO:0042330_!_taxis]][[Category:GO:0006350_!_transcription]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0019861_!_flagellum]][[Category:GO:0016989_!_sigma factor antagonist activity]]

flgM:Gene Product(s): Difference between revisions

Revision as of 18:52, 26 June 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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