atpH:Gene Product(s): Difference between revisions
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C | C | ||
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Seeded from EcoCyc | |||
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complete | |||
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GO:0046872 | |||
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metal ion binding | |||
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GO_REF:0000004 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-0066 | |||
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F | |||
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Seeded from EcoCyc | Seeded from EcoCyc | ||
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GO: | GO:0046933 | ||
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hydrogen ion transporting ATP synthase activity, rotational mechanism | |||
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GO_REF: | GO_REF:0000002 | ||
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IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
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InterPro:IPR000711 | |||
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F | F | ||
Revision as of 22:33, 21 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
AtpH |
|---|---|
| Synonyms |
F1 sector of membrane-bound ATP synthase, delta subunit[1], B3735[2][1], Unc[2][1], UncH[2][1], PapE[2][1], AtpH[2][1] |
| Product description |
ATP synthase, F1 complex, δ subunit[2][3]; Component of ATP synthase, F1 complex[2][3]; ATP synthase[2][3] ATP synthase subunit delta, membrane-bound, F1 sector[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006754 |
ATP biosynthetic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006811 |
ion transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0015078 |
hydrogen ion transmembrane transporter activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0015986 |
ATP synthesis coupled proton transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0015992 |
proton transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0046961 |
proton-transporting ATPase activity, rotational mechanism |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0016469 |
proton-transporting two-sector ATPase complex |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0016787 |
hydrolase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0045261 |
proton-transporting ATP synthase complex, catalytic core F(1) |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0046933 |
hydrogen ion transporting ATP synthase activity, rotational mechanism |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc [5] |
complete | ||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc |
complete | ||
| GO:0006754 |
ATP biosynthetic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0006811 |
ion transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0015078 |
hydrogen ion transmembrane transporter activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| GO:0015986 |
ATP synthesis coupled proton transport |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc |
complete | |||
| GO:0015992 |
proton transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc |
complete | |||
| GO:0045261 |
proton-transporting ATP synthase complex, catalytic core F(1) |
IMP: Inferred from Mutant Phenotype |
C |
Seeded from EcoCyc |
complete | |||
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| GO:0015986 |
ATP synthesis coupled proton transport |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc 11.1[3]. |
complete | |||
|
Contributes to |
GO:0046933 |
hydrogen ion transporting ATP synthase activity, rotational mechanism |
IDA: Inferred from Direct Assay |
F |
complete | |||
| GO:0045261 |
proton-transporting ATP synthase complex, catalytic core F(1) |
IMP: Inferred from Mutant Phenotype |
C |
Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition. |
complete | |||
| GO:0046933 |
hydrogen ion transporting ATP synthase activity, rotational mechanism |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of ATP synthase, F1 complex |
could be indirect |
||
|
Protein |
iscS |
Experiment(s):EBI-1146620 | ||
|
Protein |
glpC |
Experiment(s):EBI-1146620 | ||
|
Protein |
atpA |
Experiment(s):EBI-1146620 | ||
|
Protein |
glpD |
Experiment(s):EBI-1146620 | ||
|
Protein |
yjjK |
Experiment(s):EBI-1146620 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1146620 | ||
|
Protein |
atpD |
Experiment(s):EBI-1146620 | ||
|
Protein |
Subunits of ATP synthase |
could be indirect |
| |
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
|
plasma membrane |
From EcoCyc[3] | ||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS |
|---|---|
| Length |
177 |
| Mol. Wt |
19.33 kDa (calc) [2] |
| pI |
5.11[2] |
| Extinction coefficient |
6990 - 7240 (calc based on 1 Y, 1 W, and 2 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>atpH 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 6.0 6.1 6.2 6.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 7.0 7.1 7.2 7.3 Humbert, R et al. (1983) Escherichia coli mutants defective in the uncH gene. J. Bacteriol. 153 416-22 PubMed
- ↑ Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed
- ↑ 9.0 9.1 9.2 9.3 9.4 9.5 9.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
Categories
- GO:0016020 ! membrane
- GO:0006754 ! ATP biosynthetic process
- GO:0006810 ! transport
- GO:0006811 ! ion transport
- GO:0015078 ! proton transmembrane transporter activity
- GO:0015986 ! ATP synthesis coupled proton transport
- GO:0015992 ! proton transport
- GO:0046961 ! proton-transporting ATPase activity, rotational mechanism
- GO:0016469 ! proton-transporting two-sector ATPase complex
- GO:0016787 ! hydrolase activity
- GO:0045261 ! proton-transporting ATP synthase complex, catalytic core F(1)
- GO:0046872 ! metal ion binding
- GO:0046933 ! proton-transporting ATP synthase activity, rotational mechanism
- GO:0005737 ! cytoplasm
- GO:0005886 ! plasma membrane
- Proteins
- GO:0016471 ! vacuolar proton-transporting V-type ATPase complex
- Complex:ATP synthase, F1 complex
- Complex:ATP synthase
- Location:cytoplasm
- Location:plasma membrane
- Products with structures in PDB