amiD:Gene Product(s): Difference between revisions
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complete | |||
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GO:0005886 | |||
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plasma membrane | |||
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GO_REF:0000004 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-1003 | |||
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C | |||
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Seeded from EcoCyc | |||
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complete | complete | ||
Revision as of 21:59, 21 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name | |
|---|---|
| Synonyms | |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [1] |
complete | |||
| GO:0019867 |
outer membrane |
IDA: Inferred from Direct Assay |
C |
Seeded from EcoCyc [1] |
complete | |||
| GO:0009253 |
peptidoglycan catabolic process |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc [1] |
complete | |||
| GO:0009279 |
cell outer membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0998 |
C |
Seeded from EcoCyc [1] |
complete | ||
| GO:0009392 |
N-acetyl-anhydromuramoyl-L-alanine amidase activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [1] |
complete | |||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [1] |
complete | |||
| GO:0016787 |
hydrolase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [1] |
complete | |||
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [1] |
complete | |||
| GO:0007047 |
cell wall organization |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [1] |
complete | |||
| GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0019867 |
outer membrane |
IDA: Inferred from Direct Assay |
C |
complete | ||||
| GO:0008270 |
zinc ion binding |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD |
|---|---|
| Length |
276 |
| Mol. Wt |
276 |
| pI |
31.07 kDa (calc) [3] |
| Extinction coefficient |
|
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>ybjR 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Uehara, T & Park, JT (2007) An anhydro-N-acetylmuramyl-L-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 5634-41 PubMed
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Categories
- GO:0005886 ! plasma membrane
- GO:0019867 ! outer membrane
- GO:0009253 ! peptidoglycan catabolic process
- GO:0009279 ! cell outer membrane
- GO:0009392 ! N-acetyl-anhydromuramoyl-L-alanine amidase activity
- GO:0016020 ! membrane
- GO:0016787 ! hydrolase activity
- GO:0046872 ! metal ion binding
- GO:0007047 ! cellular cell wall organization
- GO:0008745 ! N-acetylmuramoyl-L-alanine amidase activity
- GO:0008270 ! zinc ion binding
- Proteins