ade:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
Data loaded by TableEdit_Loader.
Line 245: Line 245:
|
|
InterPro:IPR006680<br />SP_KW:KW-0378
InterPro:IPR006680<br />SP_KW:KW-0378
|
F
|
Seeded from EcoCyc
|
complete
|-
|
|
GO:0016810
|
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR011059
|
|
F
F
Line 274: Line 293:


|
|
GO:0016810
GO:0030145
|
|
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
manganese ion binding
|
|
GO_REF:0000002
GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
InterPro:IPR011059
SP_KW:KW-0464
|
|
F
F

Revision as of 21:46, 21 May 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Ade

Synonyms

cryptic adenine deaminase[1], B3665[2][1], Adu[2][1], Ade[2][1], YicP[2][1]

Product description

cryptic adenine deaminase[2][3];

Component of cryptic adenine deaminase[3]

Cryptic (or inducer-unknown) adenine deaminase; can be activated by hns mutation or IS elements; adenine aminohydrolase[4]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0030145

manganese ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc [5]

complete

GO:0000034

adenine deaminase activity

GO_REF:0000002
GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR006679
EC:3.5.4.2
HAMAP:MF_01518

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0006146

adenine catabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006679

P

Seeded from EcoCyc [5]

complete

GO:0016787

hydrolase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR006680
SP_KW:KW-0378

F

Seeded from EcoCyc [5]

complete

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011059

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0000034

adenine deaminase activity

GO_REF:0000020
GO_REF:0000002
GO_REF:0000003

IEA: Inferred from Electronic Annotation

HAMAP:MF_01518
InterPro:IPR006679
EC:3.5.4.2

F

Seeded from EcoCyc

complete

GO:0006146

adenine catabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006679

P

Seeded from EcoCyc

complete

GO:0016787

hydrolase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR006680
SP_KW:KW-0378

F

Seeded from EcoCyc

complete

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011059

F

Seeded from EcoCyc

complete

GO:0008152

metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0030145

manganese ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of cryptic adenine deaminase

could be indirect

Protein

nadE

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

nagC

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

rimJ

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

rplB

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

yfaS

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

rpoB

PMID:16606699[7]

Experiment(s):EBI-1146450

Protein

ymfD

PMID:16606699[7]

Experiment(s):EBI-1146450

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNNSINHKFH HISRAEYQEL LAVSRGDAVA DYIIDNVSIL DLINGGEISG PIVIKGRYIA
GVGAEYTDAP ALQRIDARGA TAVPGFIDAH LHIESSMMTP VTFETATLPR GLTTVICDPH
EIVNVMGEAG FAWFARCAEQ ARQNQYLQVS SCVPALEGCD VNGASFTLEQ MLAWRDHPQV
TGLAEMMDYP GVISGQNALL DKLDAFRHLT LDGHCPGLGG KELNAYITAG IENCHESYQL
EEGRRKLQLG MSLMIREGSA ARNLNALAPL INEFNSPQCM LCTDDRNPWE IAHEGHIDAL
IRRLIEQHNV PLHVAYRVAS WSTARHFGLN HLGLLAPGKQ ADIVLLSDAR KVTVQQVLVK
GEPIDAQTLQ AEESARLAQS APPYGNTIAR QPVSASDFAL QFTPGKRYRV IDVIHNELIT
HSHSSVYSEN GFDRDDVSFI AVLERYGQRL APACGLLGGF GLNEGALAAT VSHDSHNIVV
IGRSAEEMAL AVNQVIQDGG GLCVVRNGQV QSHLPLPIAG LMSTDTAQSL AEQIDALKAA
ARECGPLPDE PFIQMAFLSL PVIPALKLTS QGLFDGEKFA FTTLEVTE
Length

588

Mol. Wt

63.74 kDa (calc) [2]

pI
Extinction coefficient

41370 - 42745 (calc based on 13 Y, 4 W, and 11 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
edit table

<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>ade 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11692-MONOMER

UniProt (EcoliWiki Page)

UniProt:P31441

PFAM (EcoliWiki Page)

PFAM:PF01979

RefSeq (EcoliWiki Page)

RefSeq:NP_418121

ModBase (EcoliWiki Page)

ModBase:P31441


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ade:Gene_Product(s)&oldid=851166"