pcm:Gene Product(s): Difference between revisions

Standard name	Pcm
Synonyms	L-isoaspartate protein carboxylmethyltransferase type II^[1], B2743^[2]^[1], Pcm^[2]^[1]
Product description	L-isoaspartate protein carboxylmethyltransferase type II^[2]^[3] Protein-L-isoaspartate O-methyltransferase, SAM-dependent; repair of isoaspartyl residues; mutant is suseptible to secondary stresses and has a competitive disadvantage in stationary phase; monomeric; overexpression confers tolerance to thermal str^[4]
EC number (for enzymes)	2.1.1.77^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	GO_REF:0000002 GO_REF:0000003 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR000682 EC:2.1.1.77 HAMAP:MF_00090	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0005737	cytoplasm	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0006464	protein modification process	GO_REF:0000002 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR000682 HAMAP:MF_00090	P	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0016740	transferase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0030091	protein repair	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00090	P	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0008168	methyltransferase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0489	F	Seeded from EcoCyc ^[6]	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
cytoplasm
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ PYMVARMTEL LELTPQSRVL EIGTGSGYQT AILAHLVQHV CSVERIKGLQ WQARRRLKNL DLHNVSTRHG DGWQGWQARA PFDAIIVTAA PPEIPTALMT QLDEGGILVL PVGEEHQYLK RVRRRGGEFI IDTVEAVRFV PLVKGELA
Mol. Wt	23.26 kDa (calc) ^[2]
pI
Extinction coefficient	26470 - 26595 (calc based on 3 Y, 4 W, and 1 C residues)
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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10689-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P0A7A5
UniProt (EcoliWiki Page)	UniProt:P0A7A5
PFAM (EcoliWiki Page)	PFAM:PF01135
RefSeq (EcoliWiki Page)	RefSeq:NP_417223
ModBase (EcoliWiki Page)	ModBase:P0A7A5
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

pcm:Gene Product(s): Difference between revisions

Revision as of 08:09, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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-GO:0008168
+GO:0016740
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-methyltransferase activity
+transferase activity
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 GO_REF:0000004
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 IEA: Inferred from Electronic Annotation
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-SP_KW:KW-0489
+SP_KW:KW-0808
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 F
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-GO:0016740
+GO:0030091
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-transferase activity
+protein repair
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-GO_REF:0000004
+GO_REF:0000020
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 IEA: Inferred from Electronic Annotation
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-SP_KW:KW-0808
+HAMAP:MF_00090
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-F
+P
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 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
@@ Line 177: / Line 177: @@
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-GO:0030091
+GO:0008168
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-protein repair
+methyltransferase activity
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-GO_REF:0000020
+GO_REF:0000004
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 IEA: Inferred from Electronic Annotation
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-HAMAP:MF_00090
+SP_KW:KW-0489
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-P
+F
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-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete

pcm:Gene Product(s): Difference between revisions

Revision as of 08:09, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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