metQ:Gene Product(s): Difference between revisions

Standard name	MetQ
Synonyms	DL-methionine transporter subunit^[1], periplasmic-binding component of ABC superfamily^[1], B0197^[2]^[1], MetD^[2]^[1], MetQ^[2]^[1], YaeC^[2]^[1]
Product description	MetQ^[2]^[3]; Component of L- and D-methionine uptake ABC permease^[2]^[3] L,D-methionine transporter, methionine-binding receptor; lipoprotein; methionine sulfoximine sensitivity^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005515	protein binding	PMID:16606699^[5]	IPI: Inferred from Physical Interaction	UniProtKB:P0A6Y8	F	Seeded from EcoCyc ^[6]	complete
	GO:0006810	transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc 12.5 ^[7]	complete
	GO:0006865	amino acid transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0029	P	Seeded from EcoCyc 12.5 ^[7]	complete
	GO:0016020	membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc 12.5 ^[7]	complete
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003 SP_SL:SL-0039	C	Seeded from EcoCyc ^[6]	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of L- and D-methionine uptake ABC permease	could be indirect
Protein	araG		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	yfaY		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	tufA		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	kefF		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	yahK		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	gfcA		PMID:15690043^[8]	Experiment(s):EBI-891576
Protein	dnaK		PMID:16606699^[5]	Experiment(s):EBI-1135924
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
periplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MAFKFKTFAA VGALIGSLAL VGCGQDEKDP NHIKVGVIVG AEQQVAEVAQ KVAKDKYGLD VELVTFNDYV LPNEALSKGD IDANAFQHKP YLDQQLKDRG YKLVAVGNTF VYPIAGYSKK IKSLDELQDG SQVAVPNDPT NLGRSLLLLQ KVGLIKLKDG VGLLPTVLDV VENPKNLKIV ELEAPQLPRS LDDAQIALAV INTTYASQIG LTPAKDGIFV EDKESPYVNL IVTREDNKDA ENVKKFVQAY QSDEVYEAAN KVFNGGAVKG W
Mol. Wt	29.43 kDa (calc) ^[2]
pI
Extinction coefficient	20400 - 20525 (calc based on 10 Y, 1 W, and 1 C residues)
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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
motif	1-22	UniProt Manual:Signal Peptides	UniProt:P28635
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:METQ-MONOMER
UniProt (EcoliWiki Page)	UniProt:P28635
PFAM (EcoliWiki Page)	PFAM:PF03180
RefSeq (EcoliWiki Page)	RefSeq:NP_414739
ModBase (EcoliWiki Page)	ModBase:P28635
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^6.0 ^6.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^7.0 ^7.1 ^7.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 ^8.5 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed

metQ:Gene Product(s): Difference between revisions

Revision as of 04:43, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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@@ Line 80: / Line 80: @@
 |- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0005515
+|
+protein binding
+|
+PMID:16606699
+|
+IPI: Inferred from Physical Interaction
+|
+UniProtKB:P0A6Y8
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+F
+|
+Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+|
+complete
 |-
 |
@@ Line 141: / Line 160: @@
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-GO:0005515
+GO:0005886
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-protein binding
+plasma membrane
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-PMID:16606699
+GO_REF:0000004<br />GO_REF:0000023
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-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0A6Y8
+SP_KW:KW-1003<br />SP_SL:SL-0039
 |
-F
+C
 |
 Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>

metQ:Gene Product(s): Difference between revisions

Revision as of 04:43, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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