mug:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
Move help links into the <above> tag inside templates.
imported>Wikientrybot
Eliminating extra asterick
Line 53: Line 53:
!align=left {{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
||
||
** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.- 3.2.2.-]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.- 3.2.2.-]<ref name='LIB:Riley_2006'/>


|-class='sortbottom'
|-class='sortbottom'

Revision as of 21:31, 2 March 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgjF

Synonyms

G/U mismatch-specific DNA glycosylase[1], B3068[2][1], YgjF[2][1], Mug[2][1], dsUDG[2][1]

Product description

stationary phase mismatch/uracil DNA glycosylase[2][3]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006281

DNA repair

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0228
SP_KW:KW-0234

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006285

base-excision repair, AP site formation

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01956

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008152

metabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01956

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016798

hydrolase activity, acting on glycosyl bonds

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

F

Seeded from EcoCyc 12.5 [4]

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

glpK

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ynaE

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ptrA

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ydfK

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

mngB

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

holD

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ydbH

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ygfH

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

lacZ

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

polB

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

pepD

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

rplQ

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

ycgE

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

fimC

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1144720

Protein

yifB

PMID:16606699[5]

Experiment(s):EBI-1144720

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MVEDILAPGL RVVFCGINPG LSSAGTGFPF AHPANRFWKV IYQAGFTDRQ LKPQEAQHLL
DYRCGVTKLV DRPTVQANEV SKQELHAGGR KLIEKIEDYQ PQALAILGKQ AYEQGFSQRG
AQWGKQTLTI GSTQIWVLPN PSGLSRVSLE KLVEAYRELD QALVVRGR
Mol. Wt

18.67 kDa (calc) [2]

pI
Extinction coefficient

23950 - 24200 (calc based on 5 Y, 3 W, and 2 C residues)

edit table


Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
edit table


Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>mug 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12717-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A9H1

PFAM (EcoliWiki Page)

PFAM:PF03167

RefSeq (EcoliWiki Page)

RefSeq:NP_417540

ModBase (EcoliWiki Page)

ModBase:P0A9H1

PDB (EcoliWiki Page)

PDB:1MWI


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=mug:Gene_Product(s)&oldid=757986"