tauA:Gene Product(s): Difference between revisions

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[[Category:GO:0042597_!_periplasmic_space]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0042597_!_periplasmic_space GO:0042597]
GO:0042597
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periplasmic space
periplasmic space
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0574 SP_KW:KW-0574]
SP_KW:KW-0574
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C
C
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[[Category:GO:0030288_!_outer_membrane-bounded_periplasmic_space]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0030288_!_outer_membrane-bounded_periplasmic_space GO:0030288]
GO:0030288
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outer membrane-bounded periplasmic space
outer membrane-bounded periplasmic space
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001638 InterPro:IPR001638]
InterPro:IPR001638
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C
C
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[[Category:GO:0006810_!_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006810_!_transport GO:0006810]
GO:0006810
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transport
transport
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001638 InterPro:IPR001638]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007210 InterPro:IPR007210]<br />[http://www.uniprot.org/keywords/KW-0813 SP_KW:KW-0813]
InterPro:IPR001638<br />InterPro:IPR007210<br />SP_KW:KW-0813
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P
P
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[[Category:GO:0005215_!_transporter_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005215_!_transporter_activity GO:0005215]
GO:0005215
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transporter activity
transporter activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001638 InterPro:IPR001638]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007210 InterPro:IPR007210]
InterPro:IPR001638<br />InterPro:IPR007210
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F
F
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[[Category:GO:0006790_!_sulfur_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006790_!_sulfur_metabolic_process GO:0006790]
GO:0006790  
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sulfur metabolic process  
sulfur metabolic process  
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[[Category:GO:0009310_!_amine_catabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009310_!_amine_catabolic_process GO:0009310]
GO:0009310  
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amine catabolic process  
amine catabolic process  
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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PMID:16606699
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Experiment(s):EBI-1136381<br />  
Experiment(s):EBI-1136381<br />  

Revision as of 19:40, 16 February 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TauA

Synonyms

taurine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0365[2][1], YaiR[2][1], SsiA[2][1], TauA[2][1], taurine transport system periplasmic protein[2][1]

Product description

TauA[2][3];

Component of TauA/TauB/TauC ABC transporter[2]; taurine ABC transporter[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0042597

periplasmic space

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0030288

outer membrane-bounded periplasmic space

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006810

transport

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001638
InterPro:IPR007210
SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0005215

transporter activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638
InterPro:IPR007210

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006790

sulfur metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009310

amine catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of TauA/TauB/TauC ABC transporter

could be indirect

Protein

tnaA

PMID:16606699[5]

Experiment(s):EBI-1136381

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNVFIPEYCS HNKTGEQTIM AISSRNTLLA ALAFIAFQAQ AVNVTVAYQT SAEPAKVAQA
DNTFAKESGA TVDWRKFDSG ASIVRALASG DVQIGNLGSS PLAVAASQQV PIEVFLLASK
LGNSEALVVK KTISKPEDLI GKRIAVPFIS TTHYSLLAAL KHWGIKPGQV EIVNLQPPAI
IAAWQRGDID GAYVWAPAVN ALEKDGKVLT DSEQVGQWGA PTLDVWVVRK DFAEKHPEVV
KAFAKSAIDA QQPYIANPDV WLKQPENISK LARLSGVPEG DVPGLVKGNT YLTPQQQTAE
LTGPVNKAII DTAQFLKEQG KVPAVANDYS QYVTSRFVQ
Mol. Wt

34.27 kDa (calc) [2]

pI
Extinction coefficient

50420 - 50545 (calc based on 8 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

motif

1-22

UniProt Manual:Signal Peptides

UniProt:Q47537

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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>tauA 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:TAUA-MONOMER

UniProt (EcoliWiki Page)

UniProt:Q47537

PFAM (EcoliWiki Page)

PFAM:PF04069

RefSeq (EcoliWiki Page)

RefSeq:NP_414899

ModBase (EcoliWiki Page)

ModBase:Q47537


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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