ompL:Gene Product(s): Difference between revisions

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[[tsf:Gene_Product(s)|tsf]]<br />
[[tsf:Gene_Product(s)|tsf]]<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1146860 EBI-1146860]<br />
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Protein
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[[wecG:Gene_Product(s)|wecG]]<br />
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Revision as of 00:59, 6 February 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OmpL

Synonyms

predicted outer membrane porin L[1], B3875[2][1], YshA[2][1], OmpL[2][1]

Product description

predicted outer membrane porin L[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005351

sugar:hydrogen symporter activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006811

ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008643

carbohydrate transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472
SP_KW:KW-0626

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0019867

outer membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0557

C

Seeded from EcoCyc 12.5 [4]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybaK

 PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

yhdZ

 PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

groL

 PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

tsf

 PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

wecG

 PMID:16606699[5]

Experiment(s):EBI-1146860

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

outer membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKKINAIILL SSLTSASVFA GAYVENREAY NLASDQGEVM LRVGYNFDMG AGIMLTNTYN
FQREDELKHG YNEIEGWYPL FKPTDKLTIQ PGGLINDKSI GSGGAVYLDV NYKFVPWFNL
TVRNRYNHNN YSSTDLSGEL DNNDTYEIGT YWNFKITDKF SYTFEPHYFM RVNDFNSSNG
KDHHWEITNT FRYRINEHWL PYFELRWLDR NVEPYHREQN QIRIGTKYFF
Mol. Wt

27.2 kDa (calc) [2]

pI
Extinction coefficient

59820 (calc based on 18 Y, 6 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

motif

1-20

UniProt Manual:Signal Peptides

UniProt:P76773

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Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>ompL 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7814-MONOMER

UniProt (EcoliWiki Page)

UniProt:P76773

PFAM (EcoliWiki Page)

PFAM:PF06178

RefSeq (EcoliWiki Page)

RefSeq:NP_418311


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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