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!{{table_heading_style}} |Standard name
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''asnV''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK1984, b1989, JWR0041''<ref name='LIB:Riley_2006'/>
''ECK1984, b1989, JWR0041''<ref name='LIB:Riley_2006'/>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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*[http://biocyc.org/ECOLI/sequence?object=EG30022 EcoCyc Sequence Dump]  
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W3110
W3110
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|2064397|2064472|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_W3110|AC_000091|2064397|2064472|FASTA Dump}}  
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!Feature type!!Location!!Description
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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[[yedZ:Gene|zed-3069::Tn10]]
[[yedZ:Gene|zed-3069::Tn10]]
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est. P1 cotransduction: 42% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 42% <ref name='LIB:Nichols_linked_Tn'/>  
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zef-3129::Tn10
zef-3129::Tn10
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CAG12099 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39996 CGSC7397]<ref name='LIB:cgsc'/>
CAG12099 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39996 CGSC7397]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 43% <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: 43% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zee-3129::Tn10


Synonyms:zee-3129::Tn10
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG30022 EcoCyc:EG30022]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG30022 EcoCyc:EG30022]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4185 EchoBASE:EB4185]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4185 EchoBASE:EB4185]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://chase.ou.edu/macro/searchlink.php?bnum=b1989 EcoliGenExpDB:b1989]
[http://chase.ou.edu/macro/searchlink.php?bnum=b1989 EcoliGenExpDB:b1989]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG30022 EcoGene:EG30022]
[http://ecogene.org/geneinfo.php?eg_id=EG30022 EcoGene:EG30022]
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])  
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])  
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/17743 CGSC:17743]
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/17743 CGSC:17743]
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Revision as of 18:20, 29 January 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

asnV

Mnemonic
Synonyms

ECK1984, b1989, JWR0041[1]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

44.41 minutes 

MG1655: 2060284..2060359
gbrowse_img.php?coord=2059284..2061359&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2064397..2064472
gbrowse_img.php?coord=2063397..2065472&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[2]

Status:

Primer 1:

Primer 2:

zed-3069::Tn10

Linked marker

CAG18451 = CGSC7395[3]

est. P1 cotransduction: 42% [4]

zef-3129::Tn10

Linked marker

CAG12099 = CGSC7397[3]

est. P1 cotransduction: 43% [4]
Synonyms:zee-3129::Tn10

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG30022

EchoBASE (EcoliWiki Page)

EchoBASE:EB4185

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1989

EcoGene (EcoliWiki Page)

EcoGene:EG30022

CGSC (EcoliWiki Page)

CGSC:17743


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Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


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