tp2:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''tp2''  
''tp2''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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{{GBrowseFastaLink|ecoli|NC_000913|122697|122857|FASTA Dump}}
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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leuO3051::Tn10
leuO3051::Tn10
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CAG12095 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37901 CGSC7324]<ref name='LIB:cgsc'/>
CAG12095 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37901 CGSC7324]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).  
 
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The start of leuO was reannotated by Riley et al. (2006).  
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[[yadC:Gene|zad-220::Tn10]]
[[yadC:Gene|zad-220::Tn10]]
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est. P1 cotransduction: 38% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 38% <ref name='LIB:Nichols_linked_Tn'/>  
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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-8894 EcoCyc:G0-8894]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-8894 EcoCyc:G0-8894]
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<noinclude><protect>
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==References==
==References==
{{BacktoTop}}
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<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 21:42, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tp2

Mnemonic
Synonyms

'

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

2.64 minutes 

MG1655: 122857..122697
gbrowse_img.php?coord=121697..123857&genome=ecoli&name=MG1655&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[1]

Status:

Primer 1:

Primer 2:

leuO3051::Tn10

Linked marker

CAG12095 = CGSC7324[2]

est. P1 cotransduction: 19% [3]nnSynonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[2]

est. P1 cotransduction: 38% [3]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G0-8894


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  2. ↑ 2.0 2.1 CGSC: The Coli Genetics Stock Center
  3. ↑ 3.0 3.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


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