arnA:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
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''arnA''  
''arnA''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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''yfbG, ECK2248, b2255, JW2249, pmrI, SAF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yfbG, ECK2248, b2255, JW2249, pmrI, SAF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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===Notes===
===Notes===
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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{{GBrowseFastaLink|ecoli|NC_000913|2366061|2368043|FASTA Dump}}
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*[http://biocyc.org/ECOLI/sequence?object=G7168 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G7168 EcoCyc Sequence Dump]  
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W3110
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|[[PMID:16738554]]<ref name=PMID:16738554/>
[[PMID:16738554]]<ref name=PMID:16738554/>
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[[cgscmutation:106130|CGSC:106130]]
[[cgscmutation:106130|CGSC:106130]]
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0007460&formSubmitReturn=1 ASAP:ABE-0007460]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0007460&formSubmitReturn=1 ASAP:ABE-0007460]
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<noinclude><protect>
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==References==
==References==
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__NOTOC__
__NOTOC__

Revision as of 21:20, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

arnA

Mnemonic
Synonyms

yfbG, ECK2248, b2255, JW2249, pmrI, SAF[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

51 minutes 

MG1655: 2366061..2368043
gbrowse_img.php?coord=2365061..2369043&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2372709..2374691
gbrowse_img.php?coord=2371709..2375691&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔarnA736::kan

PMID:16738554[3]

CGSC:106130


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7168

EchoBASE (EcoliWiki Page)

EchoBASE:EB3844

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2255

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2797

EcoGene (EcoliWiki Page)

EcoGene:EG14091

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z3513

ASAP (EcoliWikiPage)

ASAP:ABE-0007460


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


Categories

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