kilR:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
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''kilR''  
''kilR''  
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!{{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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''kil, ECK1350, b1352, JW1347, ydaD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''kil, ECK1350, b1352, JW1347, ydaD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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{{GBrowseFastaLink|ecoli|NC_000913|1416032|1416253|FASTA Dump}}
{{GBrowseFastaLink|ecoli|NC_000913|1416032|1416253|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12155 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG12155 EcoCyc Sequence Dump]  
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W3110
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|1419722|1419943|FASTA Dump}}  
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0004537&formSubmitReturn=1 ASAP:ABE-0004537]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0004537&formSubmitReturn=1 ASAP:ABE-0004537]
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==References==
==References==
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__NOTOC__
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Revision as of 18:36, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

kilR

Mnemonic
Synonyms

kil, ECK1350, b1352, JW1347, ydaD[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

30.52 minutes 

MG1655: 1416253..1416032
gbrowse_img.php?coord=1415032..1417253&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 1419943..1419722
gbrowse_img.php?coord=1418722..1420943&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12155

EchoBASE (EcoliWiki Page)

EchoBASE:EB2075

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1352

EcoGene (EcoliWiki Page)

EcoGene:EG12155

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDAD

ASAP (EcoliWikiPage)

ASAP:ABE-0004537


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


Categories

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