scpB:Gene Product(s): Difference between revisions

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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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[[Category:GO:0016829_!_lyase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016829_!_lyase_activity GO:0016829]
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lyase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0456 SP_KW:KW-0456]
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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required fields missing   
required fields missing   
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[[Category:GO:0016829_!_lyase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016829_!_lyase_activity GO:0016829]
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lyase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0456 SP_KW:KW-0456]
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete


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!|Partner Type!!Partner!!Notes
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Subunits of [[:Category:Complex:methylmalonyl-CoA decarboxylase|methylmalonyl-CoA decarboxylase]]  
Subunits of [[:Category:Complex:methylmalonyl-CoA decarboxylase|methylmalonyl-CoA decarboxylase]]  
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could be indirect   
could be indirect  
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Revision as of 00:27, 20 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YgfG product

Synonyms

methylmalonyl-CoA decarboxylase, biotin-independent product[1], B2919 product[2][1], YgfG product[2][1]

Product description

YgfG[2]; ScpB[3];

Component of ; methylmalonyl-CoA decarboxylase[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001753

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0004492

methylmalonyl-CoA decarboxylase activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.1.41

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001753

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

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Interactions

Partner Type Partner Notes References

Protein

Subunits of methylmalonyl-CoA decarboxylase

could be indirect


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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MNLSRRNILI KGIFMSYQYV NVVTINKVAV IEFNYGRKLN ALSKVFIDDL MQALSDLNRP
EIRCIILRAP SGSKVFSAGH DIHELPSGGR DPLSYDDPLR QITRMIQKFP KPIISMVEGS
VWGGAFEMIM SSDLIIAAST STFSMTPVNL GVPYNLVGIH NLTRDAGFHI VKELIFTASP
ITAQRALAVG ILNHVVEVEE LEDFTLQMAH HISEKAPLAI AVIKEELRVL GEAHTMNSDE
FERIQGMRRA VYDSEDYQEG MNAFLEKRKP NFVGH
Mol. Wt

29.17 kDa (calc) [2]

pI
Extinction coefficient

15930 - 16055 (calc based on 7 Y, 1 W, and 1 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>scpB 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7516-MONOMER

UniProt (EcoliWiki Page)

UniProt:P52045

PFAM (EcoliWiki Page)

PFAM:PF00378

RefSeq (EcoliWiki Page)

RefSeq:NP_417394

ModBase (EcoliWiki Page)

ModBase:P52045

PDB (EcoliWiki Page)

PDB:1EF8


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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