cspD:Gene Product(s): Difference between revisions
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[[Category:GO:0003676_!_nucleic_acid_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003676_!_nucleic_acid_binding GO:0003676] | |||
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nucleic acid binding | |||
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002] | |||
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IEA: Inferred from Electronic Annotation | |||
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011129 InterPro:IPR011129]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012156 InterPro:IPR012156]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012751 InterPro:IPR012751] | |||
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F | |||
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | |||
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complete | |||
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Revision as of 01:47, 18 November 2008
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
CspD product |
|---|---|
| Synonyms |
cold shock protein homolog product[1], B0880 product[2][1], YbjA product[2][1], CspD product[2][1] |
| Product description |
DNA replication inhibitor[2][3]; Component of ; cold shock protein homolog[3] |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0006261 |
DNA-dependent DNA replication |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0003676 |
nucleic acid binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| edit table |
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
|
Protein |
Subunits of cold shock protein homolog |
could be indirect |
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH ASVIVPVEVE AAVA |
|---|---|
| Mol. Wt |
7.97 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
8480 - 8605 (calc based on 2 Y, 1 W, and 1 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
|
Domain |
4 - 64 |
||
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
<beststructure>cspD 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Categories