ade:Gene Product(s): Difference between revisions

Standard name	Ade product
Synonyms	cryptic adenine deaminase product^[1], B3665 product^[2]^[1], Adu product^[2]^[1], Ade product^[2]^[1], YicP product^[2]^[1]
Product description	cryptic adenine deaminase monomer^[2]^[3]; Component of ; cryptic adenine deaminase^[3]
EC number (for enzymes)	3.5.4.2^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000034	adenine deaminase activity	GO_REF:0000002 GO_REF:0000003 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR006679 EC:3.5.4.2 HAMAP:MF_01518	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0006146	adenine catabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006679	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0016787	hydrolase activity	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR006680 SP_KW:KW-0378	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0008152	metabolic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011059	F	Seeded from EcoCyc 12.5 ^[4]	complete
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of cryptic adenine deaminase	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MNNSINHKFH HISRAEYQEL LAVSRGDAVA DYIIDNVSIL DLINGGEISG PIVIKGRYIA GVGAEYTDAP ALQRIDARGA TAVPGFIDAH LHIESSMMTP VTFETATLPR GLTTVICDPH EIVNVMGEAG FAWFARCAEQ ARQNQYLQVS SCVPALEGCD VNGASFTLEQ MLAWRDHPQV TGLAEMMDYP GVISGQNALL DKLDAFRHLT LDGHCPGLGG KELNAYITAG IENCHESYQL EEGRRKLQLG MSLMIREGSA ARNLNALAPL INEFNSPQCM LCTDDRNPWE IAHEGHIDAL IRRLIEQHNV PLHVAYRVAS WSTARHFGLN HLGLLAPGKQ ADIVLLSDAR KVTVQQVLVK GEPIDAQTLQ AEESARLAQS APPYGNTIAR QPVSASDFAL QFTPGKRYRV IDVIHNELIT HSHSSVYSEN GFDRDDVSFI AVLERYGQRL APACGLLGGF GLNEGALAAT VSHDSHNIVV IGRSAEEMAL AVNQVIQDGG GLCVVRNGQV QSHLPLPIAG LMSTDTAQSL AEQIDALKAA ARECGPLPDE PFIQMAFLSL PVIPALKLTS QGLFDGEKFA FTTLEVTE
Mol. Wt	63.74 kDa (calc) ^[2]
pI
Extinction coefficient	41370 - 42745 (calc based on 13 Y, 4 W, and 11 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structures

Models

View models at:

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG11692-MONOMER
UniProt (EcoliWiki Page)	UniProt:P31441
PFAM (EcoliWiki Page)	PFAM:PF01979
RefSeq (EcoliWiki Page)	RefSeq:NP_418121
ModBase (EcoliWiki Page)	ModBase:P31441
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 113: / Line 113: @@
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 P
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
+|-
+|
+|
+[[Category:GO:0016787_!_hydrolase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016787_!_hydrolase_activity GO:0016787]
+|
+hydrolase activity
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006680 InterPro:IPR006680]<br />[http://www.uniprot.org/keywords/KW-0378 SP_KW:KW-0378]
+|
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
@@ Line 159: / Line 178: @@
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-[[Category:GO:0016787_!_hydrolase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016787_!_hydrolase_activity GO:0016787]
+[[Category:GO:0016810_!_hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016810_!_hydrolase_activity,_acting_on_carbon-nitrogen_(but_not_peptide)_bonds GO:0016810]
 |
-hydrolase activity
+hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006680 InterPro:IPR006680]<br />[http://www.uniprot.org/keywords/KW-0378 SP_KW:KW-0378]
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011059 InterPro:IPR011059]
 |
 F

ade:Gene Product(s): Difference between revisions

Revision as of 00:52, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

ade:Gene Product(s): Difference between revisions

Revision as of 00:52, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search