ybaB:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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YbaB product  
YbaB product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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conserved protein product<ref name='LIB:Riley_2006'/>, B0471 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaZ product<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
conserved protein product<ref name='LIB:Riley_2006'/>, B0471 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaZ product<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0006950  
[[Category:GO:0006950_!_response_to_stress]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006950_!_response_to_stress GO:0006950]
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response to stress  
response to stress  
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!{{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11100-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11100-MONOMER at EcoCyc]  
<pre>MFGKGGLGNL MKQAQQMQEK MQKMQEEIAQ LEVTGESGAG LVKVTINGAH NCRRVEIDPS
<pre>MFGKGGLGNL MKQAQQMQEK MQKMQEEIAQ LEVTGESGAG LVKVTINGAH NCRRVEIDPS
LLEDDKEMLE DLVAAAFNDA ARRIEETQKE KMASVSSGMQ LPPGFKMPF</pre>  
LLEDDKEMLE DLVAAAFNDA ARRIEETQKE KMASVSSGMQ LPPGFKMPF</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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12.01 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
12.01 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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0 - 125 (calc based on 0 Y, 0 W, and 1 C residues)  
0 - 125 (calc based on 0 Y, 0 W, and 1 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11100-MONOMER EcoCyc:EG11100-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11100-MONOMER EcoCyc:EG11100-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:P0A8B5|UniProt:P0A8B5]]
[[uniprot:P0A8B5|UniProt:P0A8B5]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF02575 PFAM:PF02575]
[http://pfam.sanger.ac.uk/family?acc=PF02575 PFAM:PF02575]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415004 RefSeq:NP_415004]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415004 RefSeq:NP_415004]
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
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[http://salilab.org/modbase/searchbyid?databaseID=P0A8B5 ModBase:P0A8B5]
[http://salilab.org/modbase/searchbyid?databaseID=P0A8B5 ModBase:P0A8B5]
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[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
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[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1PUG PDB:1PUG]
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1PUG PDB:1PUG]
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Revision as of 03:04, 15 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YbaB product

Synonyms

conserved protein product[1], B0471 product[2][1], YbaB product[2][1], DnaZ product[3][1]

Product description

conserved protein[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006950

response to stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MFGKGGLGNL MKQAQQMQEK MQKMQEEIAQ LEVTGESGAG LVKVTINGAH NCRRVEIDPS
LLEDDKEMLE DLVAAAFNDA ARRIEETQKE KMASVSSGMQ LPPGFKMPF
Mol. Wt

12.01 kDa (calc) [2]

pI
Extinction coefficient

0 - 125 (calc based on 0 Y, 0 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>ybaB 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11100-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A8B5

PFAM (EcoliWiki Page)

PFAM:PF02575

RefSeq (EcoliWiki Page)

RefSeq:NP_415004

ModBase (EcoliWiki Page)

ModBase:P0A8B5

PDB (EcoliWiki Page)

PDB:1PUG


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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