rrlH:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
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23S rRNA  
23S rRNA  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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23S rRNA (rrlH) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlG) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlD) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlC) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlA) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlB) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlE) product<ref name='LIB:Riley_2006'/>, rrlH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, rrnH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
23S rRNA (rrlH) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlG) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlD) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlC) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlA) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlB) product<ref name='LIB:Riley_2006'/>, 23S rRNA (rrlE) product<ref name='LIB:Riley_2006'/>, rrlH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, rrnH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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rrlH 23S ribosomal RNA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
rrlH 23S ribosomal RNA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  


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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0016072  
[[Category:GO:0016072_!_rRNA_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016072_!_rRNA_metabolic_process GO:0016072]
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rRNA metabolic process  
rRNA metabolic process  
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required fields missing   
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GO:0009281  
[[Category:GO:0009281_!_cytosolic_ribosome_(sensu_Bacteria)]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009281_!_cytosolic_ribosome_(sensu_Bacteria) GO:0009281]
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cytosolic ribosome (sensu Bacteria)  
cytosolic ribosome (sensu Bacteria)  
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required fields missing   
required fields missing   
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GO:0006412  
[[Category:GO:0006412_!_translation]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006412_!_translation GO:0006412]
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translation  
translation  
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required fields missing   
required fields missing   
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GO:0005737  
[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
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cytoplasm  
cytoplasm  
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required fields missing   
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Protein
Protein
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could be indirect   
could be indirect   
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-rna?type=GENERIC-RNA&object=RRLH-RRNA at EcoCyc]   
[http://biocyc.org/ECOLI/sequence-rna?type=GENERIC-RNA&object=RRLH-RRNA at EcoCyc]   
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=RRLH-RRNA EcoCyc:RRLH-RRNA]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=RRLH-RRNA EcoCyc:RRLH-RRNA]
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Revision as of 02:46, 15 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

23S rRNA

Synonyms

23S rRNA (rrlH) product[1], 23S rRNA (rrlG) product[1], 23S rRNA (rrlD) product[1], 23S rRNA (rrlC) product[1], 23S rRNA (rrlA) product[1], 23S rRNA (rrlB) product[1], 23S rRNA (rrlE) product[1], rrlH product[2][1], rrnH product[2][1]

Product description

rrlH 23S ribosomal RNA[2][3];

Component of ; 50S ribosomal subunit[3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016072

rRNA metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009281

cytosolic ribosome (sensu Bacteria)

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006412

translation

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes

Protein

Subunits of 50S ribosomal subunit

could be indirect

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc

Mol. Wt
pI
Extinction coefficient


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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>rrlH 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:RRLH-RRNA


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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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