pcm:Gene Product(s): Difference between revisions

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Collapsing IEA rows.
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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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Pcm product  
Pcm product  
|-
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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L-isoaspartate protein carboxylmethyltransferase type II product<ref name='LIB:Riley_2006'/>, B2743 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pcm product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
L-isoaspartate protein carboxylmethyltransferase type II product<ref name='LIB:Riley_2006'/>, B2743 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pcm product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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L-isoaspartate protein carboxylmethyltransferase type II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
L-isoaspartate protein carboxylmethyltransferase type II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
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** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.77 2.1.1.77]<ref name='LIB:Riley_2006'/>
** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.77 2.1.1.77]<ref name='LIB:Riley_2006'/>
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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
|
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
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GO_REF:0000020
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IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00090
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
|
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000682
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
|
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
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GO_REF:0000003
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IEA: Inferred from Electronic Annotation
|
EC:2.1.1.77
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
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cytoplasm
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
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C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006464_!_protein_modification_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006464_!_protein_modification_process GO:0006464]
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protein modification process
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GO_REF:0000020
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IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00090
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P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0006464_!_protein_modification_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006464_!_protein_modification_process GO:0006464]
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protein modification process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000682
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P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0008168_!_methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008168_!_methyltransferase_activity GO:0008168]
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methyltransferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0489
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
|
transferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0808
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0030091_!_protein_repair]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0030091_!_protein_repair GO:0030091]
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protein repair
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GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00090
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete


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cytoplasm
cytoplasm
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG10689-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10689-MONOMER at EcoCyc]  
<pre>MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ
<pre>MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ
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RVRRRGGEFI IDTVEAVRFV PLVKGELA</pre>  
RVRRRGGEFI IDTVEAVRFV PLVKGELA</pre>  
|-
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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23.26 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
23.26 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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|-
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
|
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26470 - 26595 (calc based on 3 Y, 4 W, and 1 C residues)  
26470 - 26595 (calc based on 3 Y, 4 W, and 1 C residues)  
|-
 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10689-MONOMER EcoCyc:EG10689-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10689-MONOMER EcoCyc:EG10689-MONOMER]
|
|
   
   
|-
|-  
|
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
|
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A7A5 SwissModel:P0A7A5]
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A7A5 SwissModel:P0A7A5]
|
|
   
   
|-
|-  
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
|
|
[[uniprot:P0A7A5|UniProt:P0A7A5]]
[[uniprot:P0A7A5|UniProt:P0A7A5]]
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|
   
   
|-
|-  
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://pfam.sanger.ac.uk/family?acc=PF01135 PFAM:PF01135]
[http://pfam.sanger.ac.uk/family?acc=PF01135 PFAM:PF01135]
|
|
   
   
|-
|-  
|
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417223 RefSeq:NP_417223]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417223 RefSeq:NP_417223]
|
|
   
   
|-
|-  
|
|
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
|
|
[http://salilab.org/modbase/searchbyid?databaseID=P0A7A5 ModBase:P0A7A5]
[http://salilab.org/modbase/searchbyid?databaseID=P0A7A5 ModBase:P0A7A5]
|
|
   
   
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Revision as of 02:28, 15 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

Pcm product

Synonyms

L-isoaspartate protein carboxylmethyltransferase type II product[1], B2743 product[2][1], Pcm product[2][1]

Product description

L-isoaspartate protein carboxylmethyltransferase type II[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

cytoplasm


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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ
PYMVARMTEL LELTPQSRVL EIGTGSGYQT AILAHLVQHV CSVERIKGLQ WQARRRLKNL
DLHNVSTRHG DGWQGWQARA PFDAIIVTAA PPEIPTALMT QLDEGGILVL PVGEEHQYLK
RVRRRGGEFI IDTVEAVRFV PLVKGELA
Mol. Wt

23.26 kDa (calc) [2]

pI
Extinction coefficient

26470 - 26595 (calc based on 3 Y, 4 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>pcm 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10689-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A7A5

UniProt (EcoliWiki Page)

UniProt:P0A7A5

PFAM (EcoliWiki Page)

PFAM:PF01135

RefSeq (EcoliWiki Page)

RefSeq:NP_417223

ModBase (EcoliWiki Page)

ModBase:P0A7A5


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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


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