yafO:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
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YafO product  
YafO product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted toxin of the YafO-YafN toxin-antitoxin system product<ref name='LIB:Riley_2006'/>, B0233 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted toxin of the YafO-YafN toxin-antitoxin system product<ref name='LIB:Riley_2006'/>, B0233 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
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conserved protein with a possible role in spontaneous mutagenesis;  toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein with a possible role in spontaneous mutagenesis;  toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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!Partner Type!!Partner!!Notes
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!Compartment!!Description!!Evidence!!Notes
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6117-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6117-MONOMER at EcoCyc]  
<pre>MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH
<pre>MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH
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IGKMAEAFRM RF</pre>  
IGKMAEAFRM RF</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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15.49 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
15.49 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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15470 - 15595 (calc based on 3 Y, 2 W, and 1 C residues)  
15470 - 15595 (calc based on 3 Y, 2 W, and 1 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6117-MONOMER EcoCyc:G6117-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6117-MONOMER EcoCyc:G6117-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:Q47157|UniProt:Q47157]]
[[uniprot:Q47157|UniProt:Q47157]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414768 RefSeq:NP_414768]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414768 RefSeq:NP_414768]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 00:36, 5 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YafO product

Synonyms

predicted toxin of the YafO-YafN toxin-antitoxin system product[1], B0233 product[2][1], YafO product[2][1]

Product description

conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH
IHLANENNPF PPQLRQFSRT NDEAHLVYCQ GAFDEQAWLL IAILKPEPHK LARDNNQMHK
IGKMAEAFRM RF
Mol. Wt

15.49 kDa (calc) [2]

pI
Extinction coefficient

15470 - 15595 (calc based on 3 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>yafO 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6117-MONOMER

UniProt (EcoliWiki Page)

UniProt:Q47157

RefSeq (EcoliWiki Page)

RefSeq:NP_414768


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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