mug:Gene Product(s): Difference between revisions

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Added to the category "Proteins."
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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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YgjF product  
YgjF product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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G/U mismatch-specific DNA glycosylase product<ref name='LIB:Riley_2006'/>, B3068 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Mug product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dsUDG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
G/U mismatch-specific DNA glycosylase product<ref name='LIB:Riley_2006'/>, B3068 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Mug product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, dsUDG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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stationary phase mismatch/uracil DNA glycosylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
stationary phase mismatch/uracil DNA glycosylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.- 3.2.2.-]<ref name='LIB:Riley_2006'/>
** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.- 3.2.2.-]<ref name='LIB:Riley_2006'/>
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DNA binding
DNA binding
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0238
[http://www.uniprot.org/keywords/KW-0238 SP_KW:KW-0238]
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F
F
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cytoplasm
cytoplasm
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0963
[http://www.uniprot.org/keywords/KW-0963 SP_KW:KW-0963]
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C
C
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DNA repair
DNA repair
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0228
[http://www.uniprot.org/keywords/KW-0228 SP_KW:KW-0228]
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P
P
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DNA repair
DNA repair
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0234
[http://www.uniprot.org/keywords/KW-0234 SP_KW:KW-0234]
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P
P
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base-excision repair, AP site formation
base-excision repair, AP site formation
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GO_REF:0000020
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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response to DNA damage stimulus
response to DNA damage stimulus
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|
GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0227
[http://www.uniprot.org/keywords/KW-0227 SP_KW:KW-0227]
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P
P
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metabolic process
metabolic process
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0326
[http://www.uniprot.org/keywords/KW-0326 SP_KW:KW-0326]
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P
P
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pyrimidine-specific mismatch base pair DNA N-glycosylase activity
pyrimidine-specific mismatch base pair DNA N-glycosylase activity
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GO_REF:0000020
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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hydrolase activity
hydrolase activity
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0378
[http://www.uniprot.org/keywords/KW-0378 SP_KW:KW-0378]
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F
F
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hydrolase activity, acting on glycosyl bonds
hydrolase activity, acting on glycosyl bonds
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0326
[http://www.uniprot.org/keywords/KW-0326 SP_KW:KW-0326]
|
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F
F
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG12717-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG12717-MONOMER at EcoCyc]  
<pre>MVEDILAPGL RVVFCGINPG LSSAGTGFPF AHPANRFWKV IYQAGFTDRQ LKPQEAQHLL
<pre>MVEDILAPGL RVVFCGINPG LSSAGTGFPF AHPANRFWKV IYQAGFTDRQ LKPQEAQHLL
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AQWGKQTLTI GSTQIWVLPN PSGLSRVSLE KLVEAYRELD QALVVRGR</pre>  
AQWGKQTLTI GSTQIWVLPN PSGLSRVSLE KLVEAYRELD QALVVRGR</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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18.67 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
18.67 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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|-
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
|
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23950 - 24200 (calc based on 5 Y, 3 W, and 2 C residues)  
23950 - 24200 (calc based on 5 Y, 3 W, and 2 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12717-MONOMER EcoCyc:EG12717-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12717-MONOMER EcoCyc:EG12717-MONOMER]
|
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|-
|-  
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
|
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[[uniprot:P0A9H1|UniProt:P0A9H1]]
[[uniprot:P0A9H1|UniProt:P0A9H1]]
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|-
|-  
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF03167 PFAM:PF03167]
[http://pfam.sanger.ac.uk/family?acc=PF03167 PFAM:PF03167]
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|-
|-  
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
|
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417540 RefSeq:NP_417540]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417540 RefSeq:NP_417540]
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|-
|-  
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
|
|
[http://salilab.org/modbase/searchbyid?databaseID=P0A9H1 ModBase:P0A9H1]
[http://salilab.org/modbase/searchbyid?databaseID=P0A9H1 ModBase:P0A9H1]
|
|
   
   
|-
|-  
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[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
|
|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1MWI PDB:1MWI]
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1MWI PDB:1MWI]
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{{BacktoTop}}
{{BacktoTop}}
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006281_!_DNA repair]][[Category:Products with structures in PDB]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006281_!_DNA repair]][[Category:Products with structures in PDB]]
[[Category:Proteins]]

Revision as of 00:24, 5 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YgjF product

Synonyms

G/U mismatch-specific DNA glycosylase product[1], B3068 product[2][1], YgjF product[2][1], Mug product[2][1], dsUDG product[2][1]

Product description

stationary phase mismatch/uracil DNA glycosylase[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006281

DNA repair

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0228

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006281

DNA repair

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006285

base-excision repair, AP site formation

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01956

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008152

metabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01956

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016798

hydrolase activity, acting on glycosyl bonds

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner Type Partner Notes
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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MVEDILAPGL RVVFCGINPG LSSAGTGFPF AHPANRFWKV IYQAGFTDRQ LKPQEAQHLL
DYRCGVTKLV DRPTVQANEV SKQELHAGGR KLIEKIEDYQ PQALAILGKQ AYEQGFSQRG
AQWGKQTLTI GSTQIWVLPN PSGLSRVSLE KLVEAYRELD QALVVRGR
Mol. Wt

18.67 kDa (calc) [2]

pI
Extinction coefficient

23950 - 24200 (calc based on 5 Y, 3 W, and 2 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>mug 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12717-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A9H1

PFAM (EcoliWiki Page)

PFAM:PF03167

RefSeq (EcoliWiki Page)

RefSeq:NP_417540

ModBase (EcoliWiki Page)

ModBase:P0A9H1

PDB (EcoliWiki Page)

PDB:1MWI


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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