pcm:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Structures
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<beststructure>pcm
562</beststructure>
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View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=pcm&sub=keywordSearc EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=pcm&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 01:11, 21 October 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

Pcm product

Synonyms

L-isoaspartate protein carboxylmethyltransferase type II product[1], B2743 product[2][1], Pcm product[2][1]

Product description

L-isoaspartate protein carboxylmethyltransferase type II[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0004719

protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00090

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0004719

protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000682

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0004719

protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.1.1.77

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006464

protein modification process

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00090

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006464

protein modification process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000682

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008168

methyltransferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0489

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0030091

protein repair

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00090

P

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

cytoplasm

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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ
PYMVARMTEL LELTPQSRVL EIGTGSGYQT AILAHLVQHV CSVERIKGLQ WQARRRLKNL
DLHNVSTRHG DGWQGWQARA PFDAIIVTAA PPEIPTALMT QLDEGGILVL PVGEEHQYLK
RVRRRGGEFI IDTVEAVRFV PLVKGELA
Mol. Wt

23.26 kDa (calc) [2]

pI
Extinction coefficient

26470 - 26595 (calc based on 3 Y, 4 W, and 1 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>pcm 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10689-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A7A5

UniProt (EcoliWiki Page)

UniProt:P0A7A5

PFAM (EcoliWiki Page)

PFAM:PF01135

RefSeq (EcoliWiki Page)

RefSeq:NP_417223

ModBase (EcoliWiki Page)

ModBase:P0A7A5

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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