atpH:Gene Product(s): Difference between revisions

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<big>'''Gene Ontology'''</big>
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>

Revision as of 22:15, 9 October 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

AtpH product

Synonyms

F1 sector of membrane-bound ATP synthase, delta subunit product[1], B3735 product[2][1], Unc product[2][1], UncH product[2][1], PapE product[2][1], AtpH product[2][1]

Product description

ATP synthase, F1 complex, δ subunit[2][3];

Component of ; ATP synthase, F1 complex[2][3]; ATP synthase[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006754

ATP biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0066

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006811

ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0015078

hydrogen ion transmembrane transporter activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0375

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0015986

ATP synthesis coupled proton transport

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000711

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0015992

proton transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0375

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016469

proton-transporting two-sector ATPase complex

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000711

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0139

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0066

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000711

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0015986

ATP synthesis coupled proton transport

PMID:6294057[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 11.1[3].

complete

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

PMID:2863270[6]

IDA: Inferred from Direct Assay

F

complete

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

PMID:6294057[5]

IMP: Inferred from Mutant Phenotype

C

Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.

complete

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000711

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner Type Partner Notes

Protein

Subunits of ATP synthase, F1 complex

could be indirect

Protein

Subunits of ATP synthase

could be indirect

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Notes

Localization

Compartment Description Evidence Notes

plasma membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES
FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ
QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS
Mol. Wt

19.33 kDa (calc) [2]

pI

5.11[2]

Extinction coefficient

6990 - 7240 (calc based on 1 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

NMR, MINIMIZED AVERAGE STRUCTURE

Escherichia coli

1ABV N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:ATPH-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABA4

PFAM (EcoliWiki Page)

PFAM:PF00213

RefSeq (EcoliWiki Page)

RefSeq:NP_418191

ModBase (EcoliWiki Page)

ModBase:P0ABA4

PDB (EcoliWiki Page)

PDB:1ABV

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 Humbert, R et al. (1983) Escherichia coli mutants defective in the uncH gene. J. Bacteriol. 153 416-22 PubMed
  6. ↑ Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed


Categories

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