Essential genes: Difference between revisions

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Table edited by JimHu via TableEdit
Line 15: Line 15:
<essentialGenes>
<essentialGenes>
List nonessential gene pages here
List nonessential gene pages here
arpB_2:Gene
efeU_2:Gene
folA:Gene
folA:Gene
gatR_2:Gene
gatR_2:Gene
Line 26: Line 28:
mazF:Gene
mazF:Gene
micF:Gene
micF:Gene
ilvG_2:Gene
istR-1:Gene
istR-1:Gene
istR-2:Gene
istR-2:Gene
molR_3:Gene
rrfA:Gene
rrfB:Gene
rrfC:Gene
rrfD:Gene
rrfE:Gene
rrfF:Gene
rrfG:Gene
rrfH:Gene
rrsA:Gene
rrsB:Gene
rrsC:Gene
rrsD:Gene
rrsE:Gene
rrsF:Gene
rrsG:Gene
rrsH:Gene
rrlA:Gene
rrlB:Gene
rrlC:Gene
rrlD:Gene
rrlE:Gene
rrlF:Gene
rrlG:Gene
rrlH:Gene
serU:Gene
serU:Gene
serV:Gene
serV:Gene
Line 34: Line 62:
tyrT:Gene
tyrT:Gene
wbbL_1:Gene
wbbL_1:Gene
yedN_1:Gene
yeeL_1:Gene
yfaS_1:Gene
yfaS_1:Gene
yi82_1:Gene
yi82_1:Gene
ylbE_2:Gene
yjgX_1:Gene
</essentialGenes>
</essentialGenes>



Revision as of 03:57, 22 August 2008

Introduction and caveats

This page displays a list of E. coli genes that may be essential. The list is generated by removing all genes where Keio deletions have been isolated, and all ins genes that are from insertion elements. Genes can be removed from the list by editing the list of gene pages in the wikitext of this page


<essentialGenes>
nonessential gene 1:Gene
nonessential gene 2:Gene
etc.
</essentialGenes>

tRNA genes that can be mutated to nonsense suppressors are marked as nonessential. Note that in many cases these are redundant and not all copies of a tRNA isoacceptor can be simultaneously deleted.

The list (Edit this)

<essentialGenes> List nonessential gene pages here arpB_2:Gene efeU_2:Gene folA:Gene gatR_2:Gene glnU:Gene glnV:Gene glnX:Gene lacZ:Gene leuX:Gene lysT:Gene mazE:Gene mazF:Gene micF:Gene ilvG_2:Gene istR-1:Gene istR-2:Gene molR_3:Gene rrfA:Gene rrfB:Gene rrfC:Gene rrfD:Gene rrfE:Gene rrfF:Gene rrfG:Gene rrfH:Gene rrsA:Gene rrsB:Gene rrsC:Gene rrsD:Gene rrsE:Gene rrsF:Gene rrsG:Gene rrsH:Gene rrlA:Gene rrlB:Gene rrlC:Gene rrlD:Gene rrlE:Gene rrlF:Gene rrlG:Gene rrlH:Gene serU:Gene serV:Gene ssrA:Gene tusB:Gene tyrT:Gene wbbL_1:Gene yedN_1:Gene yeeL_1:Gene yfaS_1:Gene yi82_1:Gene ylbE_2:Gene yjgX_1:Gene </essentialGenes>

Evidence

Add evidence for nonessentiality here:

Gene Reference(s) Comments

folA

PMID:8423162[1]

micF

PMID:15466019[2]


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References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Krishnan, BR & Berg, DE (1993) Viability of folA-null derivatives of wild-type (thyA+) Escherichia coli K-12. J. Bacteriol. 175 909-11 PubMed
  2. ↑ Chen, S et al. (2004) MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J. Bacteriol. 186 6689-97 PubMed