dinB:Expression: Difference between revisions

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microarray  
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Summary of data for dinB from multiple microarray studies   
Summary of data for dinB from multiple microarray studies   
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UV induction  
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[[geoprofiles:b0231|GEO Profiles:b0231]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
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NCBI GEO profiles for ''dinB''
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Revision as of 01:10, 19 August 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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Transcription unit(s)

dinB yafNOP

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Figure courtesy of RegulonDB

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Notes

Transcription is repressed by LexA [1] Transcription in stationary phase is RpoS-dependent [2]

Translation and Regulation of Translation

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gbrowse_img.php?coord=250878..250918&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

DinB protein levels are GroEL-dependent [3]

Experimental

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Mutations Affecting Expression

Allele Name Mutation Phenotype Reference
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See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Expression Studies

Type Reference Notes

microarray

EcoliGenExpDB:b0231 (EcoliWiki Page)

Summary of data for dinB from multiple microarray studies

microarray

PMID:11333217[4]

UV induction

microarray

GEO Profiles:b0231 (EcoliWiki Page)

NCBI GEO profiles for dinB

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See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Expression Resources

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to dinB Expression

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6115

EchoBASE (EcoliWiki Page)

EchoBASE:EB2935

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0231

EcoGene (EcoliWiki Page)

EcoGene:EG13141

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See Help:Expression_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Kenyon, CJ & Walker, GC (2005) DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. 1980. DNA Repair (Amst.) 4 1049-53 PubMed
  2. ↑ Layton, JC & Foster, PL (2003) Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol. Microbiol. 50 549-61 PubMed
  3. ↑ Layton, JC & Foster, PL (2005) Error-prone DNA polymerase IV is regulated by the heat shock chaperone GroE in Escherichia coli. J. Bacteriol. 187 449-57 PubMed
  4. ↑ Courcelle, J et al. (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158 41-64 PubMed


Categories

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