cysB:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Table edited by Gwen via TableEdit
Table edited by Gwen via TableEdit
Line 184: Line 184:
[[PMID:6792186]]<ref name=PMID:6792186/>
[[PMID:6792186]]<ref name=PMID:6792186/>
|
|
IDA: Inferred from Direct Assay
IMP: Inferred from Mutant Phenotype
|
|


Revision as of 17:51, 18 July 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

CysB product

Synonyms

DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding product[1], B1275 product[2][1], CysB product[2][1], positive transcriptional regulator for cysteine regulon product[2][1]

Product description

CysB[2][3];

Component of ; CysB transcriptional dual regulator[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006350

transcription

P

Seeded from EcoCyc 11.1[3].

required fields missing

NOT

GO:0019344

cysteine biosynthetic process

P

Seeded from EcoCyc 11.1[3].

CysB is a regulator of genes involved in the cystein biosynthetic process

required field missing

GO:0016564

transcription repressor activity

PMID:10506196[4]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 11.1[3].

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016564

transcription repressor activity

PMID:6792186[5]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc 11.1[3].

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes

Protein

Subunits of CysB transcriptional dual regulator

could be indirect

edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MKLQQLRYIV EVVNHNLNVS STAEGLYTSQ PGISKQVRML EDELGIQIFS RSGKHLTQVT
PAGQEIIRIA REVLSKVDAI KSVAGEHTWP DKGSLYIATT HTQARYALPN VIKGFIERYP
RVSLHMHQGS PTQIADAVSK GNADFAIATE ALHLYEDLVM LPCYHWNRAI VVTPDHPLAG
KKAITIEELA QYPLVTYTFG FTGRSELDTA FNRAGLTPRI VFTATDADVI KTYVRLGLGV
GVIASMAVDP VADPDLVRVD AHDIFSHSTT KIGFRRSTFL RSYMYDFIQR FAPHLTRDVV
DAAVALRSNE EIEVMFKDIK LPEK
Mol. Wt

36.15 kDa (calc) [2]

pI

7.25[2]

Extinction coefficient

28880 - 29005 (calc based on 12 Y, 2 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Klebsiella aerogenes

1AL3 COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD00232

SwissModel (EcoliWiki Page)

SwissModel:P0A9F3

UniProt (EcoliWiki Page)

UniProt:P0A9F3

PFAM (EcoliWiki Page)

PFAM:PF00126

RefSeq (EcoliWiki Page)

RefSeq:NP_415791

ModBase (EcoliWiki Page)

ModBase:P0A9F3

PDB (EcoliWiki Page)

PDB:1AL3

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ van Der Ploeg, JR et al. (1999) The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl. J. Biol. Chem. 274 29358-65 PubMed
  5. ↑ Jagura-Burdzy, G & Hulanicka, D (1981) Use of gene fusions to study expression of cysB, the regulatory gene of the cysteine regulon. J. Bacteriol. 147 744-51 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cysB:Gene_Product(s)&oldid=432788"