cynR:Gene Product(s): Difference between revisions

Standard name	CynR product
Synonyms	DNA-binding transcriptional dual regulator product^[1], B0338 product^[2]^[1], CynR product^[2]^[1], cyn operon positive regulator product^[2]^[1]
Product description	CynR transcriptional dual regulator^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	Aspect	Notes	Status
	GO:0006350	transcription			P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006805	xenobiotic metabolic process			P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016564	transcription repressor activity	PMID:8253686^[4]	IDA: Inferred from Direct Assay	F	Seeded from EcoCyc 11.1^[3].	complete
	GO:0005737	cytoplasm			C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016563	transcription activator activity	PMID:1592818^[5]	IMP: Inferred from Mutant Phenotype	F	Seeded from EcoCyc 11.1^[3].	complete
	GO:0016563	transcription activator activity	PMID:8253686^[4]	IDA: Inferred from Direct Assay	F	Seeded from EcoCyc 11.1^[3].	complete
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Interactions

Partner Type	Partner	Notes
DNA		Cite error: Closing `</ref>` missing for `<ref>` tag
Protein	Self	Cite error: Closing `</ref>` missing for `<ref>` tag Cite error: Closing `</ref>` missing for `<ref>` tag
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MLSRHINYFL AVAEHGSFTR AASALHVSQP ALSQQIRQLE ESLGVPLFDR SGRTIRLTDA GEVWRQYASR ALQELGAGKR AIHDVADLTR GSLRIAVTPT FTSYFIGPLM ADFYARYPSI TLQLQEMSQE KIEDMLCRDE LDVGIAFAPV HSPELEAIPL LTESLALVVA QHHPLAVHEQ VALSRLHDEK LVLLSAEFAT REQIDHYCEK AGLHPQVVIE ANSISAVLEL IRRTSLSTLL PAAIATQHDG LKAISLAPPL LERTAVLLRR KNSWQTAAAK AFLHMALDKC AVVGGNESR
Mol. Wt	32.96 kDa (calc) ^[2]
pI	6.66^[2]
Extinction coefficient	19940 - 20315 (calc based on 6 Y, 2 W, and 3 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
X-ray	E. coli	2HXR	92-291	Regulatory domain without ligand
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:PD00291
UniProt (EcoliWiki Page)	UniProt:P27111
RefSeq (EcoliWiki Page)	RefSeq:NP_414872
ModBase (EcoliWiki Page)	ModBase:P27111
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Notes

Links

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Name	URL	Comments
This is a link
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 Lamblin, AF & Fuchs, JA (1993) Expression and purification of the cynR regulatory gene product: CynR is a DNA-binding protein. J. Bacteriol. 175 7990-9 PubMed
↑ Sung, YC & Fuchs, JA (1992) The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family. J. Bacteriol. 174 3645-50 PubMed

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 [[Category:GO:0016564_!_transcription_repressor_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016564_!_transcription_repressor_activity GO:0016564]
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 transcription repressor activity
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+[[PMID:8253686]]<ref name=PMID:8253686/>
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+IDA: Inferred from Direct Assay
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 F
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 Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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+transcription activator activity
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+[[PMID:1592818]]<ref name=PMID:1592818/>
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+IMP: Inferred from Mutant Phenotype
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+F
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+Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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 [[Category:GO:0016563_!_transcription_activator_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016563_!_transcription_activator_activity GO:0016563]
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 transcription activator activity
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+[[PMID:8253686]]<ref name=PMID:8253686/>
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+IDA: Inferred from Direct Assay
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 F
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 Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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-required fields missing
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cynR:Gene Product(s): Difference between revisions

Revision as of 21:07, 17 July 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

cynR:Gene Product(s): Difference between revisions

Revision as of 21:07, 17 July 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search