rpiB:Gene Product(s): Difference between revisions
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GO:0004751 | |||
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ribose-5-phosphate isomerase activity | |||
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[[PMID:8576032]]<ref name=PMID:8576032/> | |||
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IDA: Inferred from Direct Assay | |||
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F | |||
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complete | |||
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GO:0004751 | |||
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ribose-5-phosphate isomerase activity | |||
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[[PMID:8576032]]<ref name=PMID:8576032/> | |||
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IMP: Inferred from Mutant Phenotype | |||
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F | |||
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complete | |||
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Revision as of 17:43, 26 November 2007
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
RpiB product |
|---|---|
| Synonyms |
ribose 5-phosphate isomerase B/allose 6-phosphate isomerase product[1], B4090 product[2][1], YjcA product[2][1], AlsI product[2][1], RpiB product[2][1] |
| Product description |
Component of ; RIB5PISOMB-CPLX[2] |
| EC number (for enzymes) | |
| edit table | |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005737 |
cytoplasm |
C |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
| GO:0016052 |
carbohydrate catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0004751 |
ribose-5-phosphate isomerase activity |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0004751 |
ribose-5-phosphate isomerase activity |
IMP: Inferred from Mutant Phenotype |
F |
complete | ||||
| edit table |
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
|
Protein |
Subunits of RIB5PISOMB-CPLX |
could be indirect |
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MKKIAFGCDH VGFILKHEIV AHLVERGVEV IDKGTWSSER TDYPHYASQV ALAVAGGEVD GGILICGTGV GISIAANKFA GIRAVVCSEP YSAQLSRQHN DTNVLAFGSR VVGLELAKMI VDAWLGAQYE GGRHQQRVEA ITAIEQRRN |
|---|---|
| Mol. Wt |
16.07 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
16960 - 17335 (calc based on 4 Y, 2 W, and 3 C residues) |
| edit table | |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
|
X-RAY DIFFRACTION |
Escherichia coli |
1NN4 Structural Genomics, RpiB/AlsB |
||
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 Sørensen, KI & Hove-Jensen, B (1996) Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression. J. Bacteriol. 178 1003-11 PubMed
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